Tetranychus urticae (two-spotted spider mite): 107360605
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Entry
107360605 CDS
T04901
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tut
Tetranychus urticae (two-spotted spider mite)
Pathway
tut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107360605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tut03019
]
107360605
Messenger RNA biogenesis [BR:
tut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
107360605
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Laminin_B
Motif
Other DBs
NCBI-GeneID:
107360605
NCBI-ProteinID:
XP_015782781
UniProt:
T1K578
LinkDB
All DBs
Position
Unknown
AA seq
651 aa
AA seq
DB search
MAQQNSAKVNSLDEVTSSLMNSIREAVAASNSFNVDDFDINSTYSSFKNLMEAEEKNMIT
LISSLAKKARLDDRNVRKSITPEDKFDALCDLNDVIMDRINHSLDEAEGLKKKDQELIVA
TLNVSKNTAVAISQQRTQWMSNQAQGVKRKRDMVVNLLTAKNIHRPQAKFKDKIDNKSCP
FVPSLKEKPNSIRPLAIYMEKDEEGEEHACHPYETELEKWEPTSDMLIPISEPILPVELK
EENFHFVDDSVKLKDLMQILKNVKELAIDLEAHSYRSFQGFTCLIQISTRTDDYIIDALE
LRNELSILNEVFTDPKIIKVFHGADSDIQWLQRDFSVYVVGLFDTGQAAKALNLSHNSLA
YLLKHYCNLDVNKVYQLADWRIRPIPQDMLNYAREDTHYLLYIYDTMRKELLDKDPSGKL
IKQVFDASREVCLKKYEKPLFKPEGFNMILKRSTASLNPRQLYALKEIYAWRDKLARLED
ESTGYILPNHMMLQISDVLPREQQGILACCNPIPPIVKQQLNELHHIILKARDIPIENKV
FSTPVPFQRIISTRCLDYDSLIHPRHDLIYTSDSQSLNTLLKDGKGDDIDYSEISAKLSS
KSTENLSSPLLDFFQSSTTIKRPELVKKVSSNFISPYQRYVNYISSTRSKN
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggctcaacaaaacagtgcaaaagtgaatagtctcgatgaagtgacttcctcattgatg
aattccatccgagaagcagtggccgctagtaactccttcaatgtcgacgattttgatatc
aattcaacgtattcttcctttaagaatctcatggaagctgaagaaaaaaacatgattact
ttaataagttcattagctaaaaaagctcgtttagatgacagaaacgtaaggaaatccatt
acgcccgaagataaatttgatgctctctgcgacttgaatgatgttatcatggacagaatt
aatcatagtttagatgaagctgaagggttgaagaaaaaagatcaagaacttattgtcgca
actttgaatgtcagtaagaatacagctgtagcaataagccaacagaggactcaatggatg
tctaatcaagctcaaggtgttaagagaaaacgagacatggttgtaaatttattaactgcc
aagaatattcatcgtccacaagcgaaatttaaggataaaattgacaacaaaagctgtcct
tttgttccttctttgaaagaaaaacccaactctattcgacctttagcaatttacatggaa
aaagacgaagaaggagaggaacatgcttgccacccttatgagactgaattggaaaaatgg
gaaccaacatctgatatgttgattccaattagtgaacctattcttccagttgaattaaag
gaggaaaactttcatttcgttgatgattccgttaagctaaaagatttaatgcaaattttg
aaaaacgttaaagagctggcaattgatttagaggctcatagttacagatctttccaagga
ttcacttgcctcattcaaatttcaactcgaacagatgattatataatagatgctttagaa
ttgagaaatgaactcagcatcttgaatgaagtttttacggatccaaaaatcattaaggtt
ttccatggagctgattctgatattcagtggcttcaaagagacttctcagtttatgttgtt
ggactgtttgatactggacaagctgcaaaagctttaaatttaagccacaactctttagca
tacttattgaaacattattgcaatttagatgttaataaagtatatcagctagcagattgg
aggattcgcccaataccacaagacatgttaaactatgcgagagaagacactcattacttg
ttatatatttacgacactatgagaaaagaattgttggataaagatccttctgggaaatta
attaaacaagttttcgatgctagtcgagaagtttgtcttaagaaatatgaaaaacctcta
ttcaaacctgagggattcaatatgatactcaaacgttcaacggcatctctaaatcctaga
caattatatgcactcaaagaaatatatgcgtggcgagacaaacttgctagattagaagac
gagagtacagggtatattcttcctaaccatatgatgcttcaaatatctgacgtacttcct
agagagcaacaaggaattttggcttgctgtaatcccattcctccgattgtcaaacaacaa
ttaaacgaattgcatcacatcatcttgaaagctagagatattcctattgagaataaagtt
ttttcaaccccagttccgttccagcgaataatttcaacccgatgtcttgattatgatagt
ttaattcatcctcgacatgatcttatttacacgagtgactctcaaagcttaaatactcta
ctcaaagatggaaaaggtgatgatattgattactctgagatatctgctaaactctcgtca
aaatctaccgaaaatttatcttctcctcttttagactttttccagagttcaaccacgata
aaaagacctgaacttgttaaaaaagtatcttctaatttcatttctccttatcaaagatat
gtaaattacatttcatcaactagatccaaaaattaa
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