Tetranychus urticae (two-spotted spider mite): 107362011
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Entry
107362011 CDS
T04901
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tut
Tetranychus urticae (two-spotted spider mite)
Pathway
tut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107362011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tut03019
]
107362011
03041 Spliceosome [BR:
tut03041
]
107362011
03009 Ribosome biogenesis [BR:
tut03009
]
107362011
03016 Transfer RNA biogenesis [BR:
tut03016
]
107362011
Enzymes [BR:
tut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107362011
Messenger RNA biogenesis [BR:
tut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107362011
Spliceosome [BR:
tut03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107362011
Complex C
U4/U6.U5 tri-SnRNP related factors
107362011
Ribosome biogenesis [BR:
tut03009
]
Eukaryotic type
Pre-60S particles
Helicases
107362011
Transfer RNA biogenesis [BR:
tut03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107362011
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Death_3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
107362011
NCBI-ProteinID:
XP_015784473
UniProt:
T1K9A2
LinkDB
All DBs
Position
Unknown
AA seq
1050 aa
AA seq
DB search
MDLDLFDVFEQDEPVEDNSRRKRKSQLENNSEKKPKNSPEDVITIVDDIDLRVQDVDERL
PSIKLEKTVKDEDDNDIIIEPIETIDEDNEGNSAEDALRLDNLISKVSIHQLDAEGGCLH
EVVCPIDAEYVPLRDLSENEGYKPAKEYEFTLDPFQKKAILCIENNQSVLVSAHTSAGKT
VVAEYSIAKSLRDKQRVIYTTPIKALSNQKYREFFEEFRDVGLITGDVTINPSASCLIMT
TEILRLMLFRGSEIMREVGWVIFDEIHYMRDKERGVVWEETIILLPDNVHHVFLSATIPN
ARQFAEWITHLHHQPCHVVYTDFRPVPLQHYIFPAGGDGLHLVVDDSGTFKEDNFNQAMS
VIAKAGDAAKGDSFRGRKGGVKEQSNCFKVVRTIMERQLAPVIVFSFSKKECEAYALQMC
KLDFNSQQEKELVEEVFKNAIEILSDEDKKLPQIEHVLPLLKRGIGIHHSGLLPLIKETI
EILFGEGLIKALFATETFAMGLNMPARTVVFTNARKFDGRDFRWISSGEYIQMSGRAGRR
GIDDKGIVILMIDEKMSPSVGRDLIKGKPDAINSAFHLTYNMVLNLLRVEDVNPEYMLQH
SFYQFQHYAEVPNLIEKLKNLEKQYDSLAIIDEENVSNYFKIKNHLSSLTDQFLETIRQP
GYLVPFLQPGRLMKFVSDDGVDLGWGAIIDFQKKHNKKRNPVLDESAIYSIDCIINIDRS
SERSGLFRPPVKPNDGEMRVISVMLKNITQISSVRIFIPQDIKSYDSRQSVRKSMLAVMK
QFFDAPPLLDPVKDMKINTKEFKTLVSKMETDKKRLDACRNITEKQKEQYEVKNSIADQI
KQVKAELRKAQSLLQMDELKCRKRVLRRLGYCTASDVIEIKGRVACEITSGDELLITEML
FNGLFNDLNPYQTNALLSCFVFEEKTEQMPKLTDELSKPLKQMQELAKRIATVSKEAKLE
IDTEAYISSFKPNLMDVIYAWSKGATFAQLCKMTDAFEGSIIRCMRRLEELLRQMVQAAK
VIGNTDLENKFSEADKLIKRDIGFAASLYL
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggatctagatttgtttgatgtgtttgaacaagatgaaccagtggaggataattcaaga
aggaaacgaaaatctcagctggaaaataattcagaaaaaaaaccaaagaattctccagag
gatgttattactattgtcgatgatattgacctcagagtacaagatgtagatgaacgctta
ccgtctattaaactcgaaaaaacagtaaaagatgaggacgataatgacattattattgaa
ccgattgagaccattgatgaggataatgaaggaaatagcgccgaagatgccttgagactt
gataatttgatttctaaagtttctattcatcaactggatgcagaaggaggctgtttacac
gaagttgtctgtccgatcgatgctgaatatgttccactgcgggacttgagcgaaaatgaa
ggctacaaacctgccaaagaatacgagttcactcttgatccgtttcaaaaaaaggcgatc
ctctgtattgaaaataaccagagcgttcttgtgtcagctcacacctcggctggtaaaact
gttgtagcagagtattctattgccaaatcactgcgtgacaaacaaagagtaatttatacc
actccaattaaagctttgagtaatcaaaagtacagagaatttttcgaagagttcagagac
gttggtttgattactggagatgtcaccatcaatccatccgcttcttgtcttatcatgacc
actgaaattttgcgattaatgttatttcgaggtagtgaaatcatgagagaagttggatgg
gtcatttttgacgaaattcattacatgagagacaaggaaagaggagttgtttgggaagaa
acgataattttgttgccagataatgtgcatcatgtttttctatccgctactattccaaat
gctcgtcaattcgctgaatggatcacacatcttcatcatcagccttgccatgttgtttac
actgacttcagaccagtaccacttcaacattacatatttcccgccggaggtgatggtctt
catcttgttgtcgatgattcgggaacttttaaagaagataactttaatcaggcgatgagc
gttattgcaaaagcaggtgatgctgcaaaaggagattcattcagaggccgaaaaggtggc
gttaaagaacaatccaactgtttcaaagttgtcaggactattatggaaagacaattagca
ccagttatcgttttcagcttcagtaaaaaggaatgtgaagcttatgctttacaaatgtgc
aaactcgatttcaattctcagcaagagaaagaattggttgaagaagtcttcaagaatgcc
attgagattcttagtgacgaagataaaaaacttcctcagatagaacatgtgcttccactt
ctgaaaagaggaattggtattcatcacagtggtcttttacctttgatcaaagaaacaatt
gaaatcctttttggcgaaggattgattaaagccttatttgcaacagaaacttttgcaatg
ggacttaatatgcctgcaagaacagttgtattcactaatgctagaaaatttgatggacgt
gattttcgttggatatcatctggtgaatatattcaaatgagtggacgagctggtagaaga
ggtatcgatgacaaaggaatcgttatcctcatgattgatgaaaaaatgagcccttcagtt
ggtcgtgatttaatcaaaggtaaacccgatgctatcaacagtgcattccacttgacatat
aacatggtcttgaacttactgagagttgaagatgttaaccctgaatatatgctgcaacac
agcttctaccaatttcaacattatgctgaagtaccaaatttgatagaaaaacttaagaat
ttggaaaaacaatacgatagtcttgcaattatagacgaggagaatgtttccaattacttt
aaaatcaaaaatcatctttcctctctcactgatcaatttcttgagactataagacagcct
ggttatttagtaccttttctccaaccaggacgtctgatgaagttcgtcagtgacgatggc
gttgatcttggatggggtgctattattgattttcaaaagaaacataacaaaaaacgcaat
ccagttcttgacgagagtgcaatttattcaatcgactgtatcatcaacatagaccgatcc
tctgaaagatctggtttattcagacctccagtaaaaccaaatgacggagaaatgagagtt
atatctgttatgttgaaaaacataactcaaataagttctgttcgtattttcattcctcaa
gacatcaaaagctatgatagccgacaatctgttcgtaaatcaatgttggctgtgatgaaa
caattttttgatgctccacctctactagatccagttaaagatatgaaaattaatacaaaa
gaattcaaaaccctcgttagtaagatggaaaccgacaaaaagcgactcgatgcatgtaga
aacataactgaaaaacaaaaagaacaatatgaagtcaagaattcaattgctgatcaaatc
aaacaagttaaagcagaattacggaaagctcagagtcttcttcaaatggatgaattaaaa
tgtcggaaacgagtacttcgtcgtttaggctactgtacagcatctgatgtcattgaaatc
aaaggacgtgttgcttgtgagataacaagtggagacgagctattgataactgaaatgtta
tttaatggacttttcaatgatctaaacccataccaaactaatgctcttctaagttgtttt
gtattcgaagagaaaactgaacaaatgcctaaattaacagatgaattgtccaaaccttta
aagcaaatgcaagaactagccaaaagaatagcgacagtatccaaagaagctaaattagaa
atagacactgaagcatacatttcttctttcaagcccaatttaatggatgtgatctatgcg
tggtctaaaggtgctacttttgcccagctttgtaagatgactgatgcctttgaaggatcg
attattcgttgtatgaggcgattagaagaattactccgtcaaatggtccaagctgcaaaa
gtaattggtaatactgatttagaaaataaattttcagaagctgataaacttataaaacga
gacattggttttgctgccagtctttacttgtaa
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