Tetranychus urticae (two-spotted spider mite): 107366055
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Entry
107366055 CDS
T04901
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tut
Tetranychus urticae (two-spotted spider mite)
Pathway
tut03013
Nucleocytoplasmic transport
tut03015
mRNA surveillance pathway
tut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107366055
09122 Translation
03013 Nucleocytoplasmic transport
107366055
03015 mRNA surveillance pathway
107366055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tut03019
]
107366055
03041 Spliceosome [BR:
tut03041
]
107366055
Enzymes [BR:
tut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107366055
Messenger RNA biogenesis [BR:
tut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107366055
Spliceosome [BR:
tut03041
]
Complex C
Other components
EJC/TREX
107366055
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107366055
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Thioredoxin_6
AAA_19
Ribosomal_L26
Motif
Other DBs
NCBI-GeneID:
107366055
NCBI-ProteinID:
XP_015789119
LinkDB
All DBs
Position
Unknown
AA seq
430 aa
AA seq
DB search
MAENENELLDYEEEEEQTSGVVVDNNNLQTSNNAVEPKKGGYVSIHSSGFRDFLLKPELL
RAIIDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLDPVDGQVSVL
VMCHTRELAFQISKEYERFSKYMPNIKVSVFFGGMNISSDEKTLKNNTPHIVVGTPGRIL
ALVRSKKLNLKHLKHFILDECDKMLEQLDMRKDVQEIFKATPHEKQVMMFSATLSKEIRP
VCKKFMQEPLEVYVDDEAKLTLHGLQQYYVKLKDTEKNRKLFELLDVLEFNQVVIFVKSV
QRCIALAQLSVEQNFPAIAIHRAMTQEERLSRYQQFKDFHKRILVATNLFGRGMDIERVN
IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKVLNEVQDRFDVNIPELPEE
IDISSYIEGR
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaacgagaatgagttattggattatgaagaagaagaggaacaaaccagtgga
gttgtggtggacaacaataacttacagaccagtaacaatgctgtggagccaaagaaaggt
ggttacgtatccatccattcatctggattccgcgatttcctactcaaacctgagctcctt
cgagctatcatcgattgtgggtttgaacatccaagtgaagtacaacatgaatgtataccc
caagcaatcctcggaatggatatcctgtgtcaagcaaagtctggtatgggtaaaaccgct
gtcttcgtactggctaccttacaacaattagatcctgtagatggacaggtttcagttttg
gtcatgtgtcacactcgtgaattggccttccagatctccaaggaatacgagcggttttcc
aagtacatgccaaacatcaaggtgtcggttttctttggtgggatgaatatttccagtgac
gagaagacgcttaaaaacaacacaccccacatcgttgtcggaactcccgggcgtatttta
gctttggttagatctaagaaattgaatctcaagcatctcaaacatttcattttagatgaa
tgtgataaaatgcttgaacagctggacatgaggaaagatgttcaagaaatattcaaagct
acacctcacgaaaaacaagtcatgatgttcagtgcaacactgtccaaagaaattagacca
gtttgcaaaaaattcatgcaagagcctctcgaagtatacgtcgatgatgaagctaaactc
acattgcatggtttacaacaatactacgtcaaacttaaggataccgagaaaaacagaaag
ctgtttgaacttttggatgttctcgaattcaatcaagtagttatttttgtgaagagtgtc
cagagatgtattgctttggcgcaattatcagttgaacaaaattttccagccattgctatc
cacagagctatgactcaagaagagagattatcacgttatcaacagtttaaagattttcat
aagcgtatcttggtcgcgactaacctttttggtcgaggtatggatattgagagagtcaat
attgtcttcaactatgacatgcccgaagacagtgatacctacctccatcgagtagctcgt
gctggtagatttggaaccaaaggtctcgctattacttttgttagcgatgagactgatgcc
aaagtattaaacgaagttcaagatcgtttcgatgtgaacatacctgaattaccggaagaa
attgatatttcaagttacattgaaggacgataa
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