Tetranychus urticae (two-spotted spider mite): 107366558
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Entry
107366558 CDS
T04901
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tut
Tetranychus urticae (two-spotted spider mite)
Pathway
tut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107366558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tut03019
]
107366558
Enzymes [BR:
tut01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107366558
Messenger RNA biogenesis [BR:
tut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107366558
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
107366558
NCBI-ProteinID:
XP_015789672
UniProt:
T1KR32
LinkDB
All DBs
Position
Unknown
AA seq
542 aa
AA seq
DB search
MNVDCSNFTAVLPKVIEEIQKCNFIAIDIEFSGLFCNADCTPSLFDSLEERYVKLRNNVS
SFIPVQLGISLFTKSEGKNEFKVNTYSFYCCPRFYGPPISCFSLETGAIEFLADNSFDFN
KFARYGIPFLNKPQEETFRKFMKEKFISFDLSYSMIDRLIDIRKQIKEWMILLPVRDGCR
HGENTFPYQPFTNPLINYLLIDHLRKEYKNFWITQQGDKLFIKTVSHAERKQLMSSIEKE
ENDVIDSCIGLTKLVNVIIESGKPIVGNNMMVDLTMLYHHFIEPMPVNLQHFKKEILKNF
PVIYDVKSIIFNVKKYFPAYEDSLSARNLEDLYEKLSKPSFTSSSKFQSTIIRDDSKDCD
NGNHYHDAGFDAYITGYVFLRVCALIAEYESDKCILEPVVEWESLIRPITPFKNKINLIR
AAYHFMDLEAKSQKAVRPEWLVLRCRDKSTSISIAQIYNTFSSASTTIDFKQISKSEIVL
AVGNFRTARDLIEKYRKDKNYMITRYNFIRDSTAGRLLLWTTLIIGAGSTGYLVHKVMSK
YL
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtagattgttccaatttcaccgctgtcttgcccaaagttattgaggagattcaa
aaatgcaatttcattgctattgacattgaattttctggccttttctgcaatgctgactgt
acgccatcactattcgattccttggaggagagatacgtgaaattgagaaataatgtatcc
agctttatacccgttcaattgggaatatctcttttcactaaaagcgaaggaaaaaatgag
tttaaagtcaacacatactccttttattgctgtccaagattttatggaccaccaattagc
tgtttttcattagaaactggagctatcgaattcttagcagataattcattcgatttcaac
aaatttgctcgttatgggataccctttttgaataaaccgcaagaggaaacatttagaaaa
ttcatgaaggagaagtttatttcattcgatttatcttattcaatgattgatagattgatt
gatattcgaaaacaaatcaaggaatggatgattttattgcccgtgcgagatggatgcaga
catggagaaaataccttcccttatcagccattcaccaaccctttaataaattacctgctc
atcgatcatttgagaaaagaatacaagaatttttggatcactcaacagggcgataagcta
tttataaagactgtttcacacgctgaaaggaaacaattgatgtccagcattgaaaaggaa
gaaaatgacgtaattgattcatgtattggtttaactaaactagtcaatgttattatcgaa
tctggtaaaccaattgtaggaaacaacatgatggttgatcttactatgctttatcaccat
tttatcgagccaatgccagtcaatttgcagcacttcaagaaagaaattttgaaaaatttt
cccgtcatctacgatgttaagtccattattttcaatgtaaaaaaatattttccagcttac
gaagatagcctttcagctcgtaatttagaagatctttatgaaaaattatccaaaccatct
tttacaagttcatcaaaatttcaatccaccataattagagatgattcaaaggactgcgat
aatgggaaccattaccatgatgcaggatttgatgcttatattactggatatgttttcctg
cgagtctgtgcactcatagctgaatatgaatcggacaagtgtatattggaaccagtagta
gaatgggaatctcttataagaccaataacgccatttaagaataaaattaatttaattcga
gctgcatatcactttatggatctagaagcaaaaagtcaaaaggctgtccgacctgagtgg
ttagtcttgcgatgccgagataaatctacatcaatctccatagctcaaatttacaatacc
ttttcatccgccagtaccacaatagatttcaaacaaatcagtaaaagtgaaattgtctta
gccgtcggtaatttcagaacagcccgagatttgattgaaaagtatcgcaaggataaaaat
tacatgataaccagatacaatttcattcgtgattcaactgctggacgattgctgctgtgg
acaactttgatcattggtgctggatcaactggataccttgtacacaaagtgatgtcaaaa
tatctctaa
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