Tetranychus urticae (two-spotted spider mite): 107367866
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Entry
107367866 CDS
T04901
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tut
Tetranychus urticae (two-spotted spider mite)
Pathway
tut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107367866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tut03019
]
107367866
03041 Spliceosome [BR:
tut03041
]
107367866
Messenger RNA biogenesis [BR:
tut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107367866
Spliceosome [BR:
tut03041
]
Complex B
Other components
Prp19-related factors
107367866
Complex C
107367866
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
TPR_16
Mad3_BUB1_I
ARM_TT21
ARM_TT21_C
TPR_21
Mad3_BUB1_I_2
Motif
Other DBs
NCBI-GeneID:
107367866
NCBI-ProteinID:
XP_015791103
LinkDB
All DBs
Position
Unknown
AA seq
818 aa
AA seq
DB search
MDTQNILISTLNFGKPENLPFEEEVCRYPYSIKHWLRYINAKKDEKAPLEVVNLLYERAL
KELPGSYKLWYGYLLWRKRNLDGKSIVDIEYKQVNNCFERSLVFMHKMPRIWIEYLKLLM
HQHLITKTRRTFDRALQALPITQHNRIWPLYLEFVKSYHIPETAIRVYKRYLKLAPEDGE
EFIDYLRGIGRLDDAALKLYDIVNDDNFISKEGKSKHQLWNDLCELISKNPDKVQSLNVE
NIIREGIKQYRDEQGKLWNAYAQYFTRSGLFERARDIYEEAISSVMTIKDFSLVFDAYSQ
SEENLIKAQMENQDLTDDEEVELELRLAKYEYLIERRPLLLNSVALKQNPHNVEEWHKRV
KLLEENPLEVIRTYMNAVQTVDPKQAIGKVHSLWIEFAKFYEKNDQPEDAREVFEQAVKA
SYARVNDLATVWCEYAEMELRSDNFEQALKLMQRATTASKKANFFDENEPVQNRVHRSLK
LWSMYADLEESFGTFQSTKAVYDRIIDLRITTPQIIMNYGLFLEENNYYEEAFKAYERGI
SLFKWPIVYDLWNTYLTKFLQRYKGSKLERARDLFEQCLEECPKNLAKTFYLLYAKLEED
YGLAKHSMSIYERATREVDSKSRFEMYNIYIKKAAEMFGVTYTRQIYEKAIENLSDNEAR
EMCLRFADLEQKLGEIDRARAIYAHCSQMSDPRTQPEFWDIWKLFETKHGNEDTLREMLR
IKRSVQATFNTSVNFMAAQMMSTIKEKTPASSMEAMEMQIADSDVSQAVEETEKRAKVVP
SKKDISFVRATTNTIIDENQAPGTIFNPDEIDIETDDL
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggacactcagaatattttgatatccacattaaactttggtaaaccggaaaatttgcca
ttcgaagaggaagtttgccgatatccttattcaatcaaacattggcttcgatatattaat
gctaagaaagatgaaaaggctccattggaagttgtcaacttattatacgagcgagctttg
aaagaattaccgggaagttataagttatggtatggatacctgctttggaggaaaagaaat
ttggatggaaaatcaatcgttgacattgaatacaagcaagtaaacaattgtttcgagagg
agtttagttttcatgcacaaaatgcctcgtatatggattgaatacctgaaattattaatg
caccagcatcttataaccaaaactcgtcgtacatttgaccgagctctacaagcattacct
attactcaacacaatcggatttggccactttacttggagtttgtaaaatcttatcacatt
cctgagacagctattagagtgtacaaaagatatctaaaactggctccagaagatggtgaa
gagttcatcgattatttgagaggaatcggaagactcgatgatgcagcccttaaattatat
gatattgtcaatgatgataactttatttccaaggaaggaaaatcaaagcatcaactttgg
aacgacttatgtgaattgatctccaaaaatcctgataaagttcaatcattgaatgtcgaa
aacattataagagaaggaatcaaacaatatagagatgagcaaggtaaactttggaatgca
tatgcccaatactttacacgaagcggattatttgaaagagctagagatatttacgaagaa
gcgatctcatctgtaatgaccatcaaagatttttcacttgtttttgatgcatattcccaa
agtgaggaaaatcttattaaagctcagatggagaatcaagacttaaccgatgatgaggag
gttgaattagaactgcggctggcaaaatacgagtatttgattgagaggaggccgttgttg
ctgaacagtgttgcacttaagcaaaatcctcataatgttgaagaatggcataaaagggtt
aaactattggaagaaaatcctttggaagtcattcgaacttacatgaatgctgttcaaact
gttgatcccaagcaagcaattggaaaagtacattctttatggatcgagtttgccaaattt
tatgaaaaaaatgaccaaccggaagatgcacgagaagtattcgagcaagctgtcaaagca
tcgtatgccagagtcaatgatttagcaactgtttggtgtgaatatgccgaaatggaatta
agaagtgataattttgagcaagcactgaagctcatgcaaagagccactacagcttccaaa
aaggctaactttttcgatgaaaatgaacctgttcaaaatcgtgttcaccgttctctcaaa
ctttggtcgatgtatgctgatcttgaggagagttttggaacttttcaatcaaccaaagct
gtctatgatagaatcatagatctaagaataaccactccacagattataatgaattacggt
ctatttttggaagaaaacaattattacgaagaagcctttaaagcttatgaaagaggaatc
agcttgttcaagtggcccattgtttacgacctgtggaacacctatttaaccaaattttta
cagcgttacaaaggatcgaaattggaacgagcacgagatttattcgagcaatgtctagag
gaatgcccgaaaaacttagctaaaacattttaccttctttatgcaaagctagaagaagat
tacggattggcaaaacactcgatgtccatttatgagagagctacccgagaagtcgattcc
aaaagtcgatttgaaatgtataatatttatataaagaaagcagctgaaatgttcggggta
acttacacaagacaaatatatgagaaagccattgaaaatctcagtgataacgaagcaaga
gagatgtgtcttagatttgctgatctcgaacaaaaattaggagaaattgatcgagcacga
gctatttacgctcactgtagtcaaatgtccgatcctagaacacaaccagaattttgggat
atttggaagttattcgaaactaaacatggtaacgaggatacattaagagaaatgttacga
atcaaaagaagtgtccaagcaactttcaatacatcagtaaatttcatggctgcacaaatg
atgagtacaattaaagaaaagacaccagcttcaagtatggaagcgatggaaatgcagatt
gcagattccgatgtttctcaagctgtggaagaaaccgaaaaacgggctaaagtcgtacct
tccaaaaaagatatttcgtttgttcgtgctacaacgaatactatcattgatgagaatcaa
gctccaggcacaattttcaatccagatgaaattgatatcgaaacagatgatctttga
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integrated database retrieval system
