Tetranychus urticae (two-spotted spider mite): 107369277
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Entry
107369277 CDS
T04901
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tut
Tetranychus urticae (two-spotted spider mite)
Pathway
tut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107369277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tut03019
]
107369277
Messenger RNA biogenesis [BR:
tut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107369277
mRNA degradation factors
5'-3' decay
Decapping complex
107369277
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
107369277
NCBI-ProteinID:
XP_015792720
UniProt:
T1L1E2
LinkDB
All DBs
Position
Unknown
AA seq
797 aa
AA seq
DB search
MSKVDEVDYYTFHNNPQQGSSGYLLDSDDSSSDPAWVERRQKLINRLSNDLAIAPEDADD
FDALNDETFGAATFDEDWEHQHEKMASLISGPSQYQSPAGLSGMHNQPHTTTSPSPHPPS
SSSSQFLNQNNLPCFDSSKVLDCQTIEQGMHNLSTSSRSIPPEADRQKMSSNSYFFGKTS
LENPFNNTPIRSTESIWNTDLASTKLNHNDNTNIQMTSPILMANVVSSSMCAPAESSSVN
QPRIIENDDNSSSRPVIKRPVRAEDLEAMLLNSDVNRKNSTSTEKSTPKASESNLKNEKN
DSGWSPFSMGGFIPNIQPSTNVNTNDQNSQPQAPIGYGKPSSVNSRPSADVDPKNSVSIG
KPFKPMTLDELERHLLNDNPNNTQIETKLVQNAGNNLNKFFPGVDLTNNNQERRVLPEPV
QPLVSSTIVPPSNETINPKPLFSSLFMPGNRPLIQQFVPTVISRPPFVPFLPGPIPNPLF
IQHHQMQHLQQLHQRFAHQRRQFYPRPGTPYQHHDRSSNDDEYAGLMTQSNKEWLIKIQN
SALNFTNPYKEDFYFVSFKTKQLATAAKAKKGDNGSKVPALIIPERKIDDSTKVEYVLVQ
FEGCLGKIRVIDVKCPRKLLDVDPKHPTEIVDPSQDRPMTPIGRAELNAFRRLLLDIEQL
YALMLEIDEEDKKMGALPEFQRVPHANRRSDLCNQLFRGVYDEQSENINQKIANVRKGIA
LIVRSLQVLSDSKQKAAIVKSLLDSNNIHYVTNYRDKGLHHLDFKEILTDVIASLKESQL
PEIDLLSRKLNSTSFLN
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagttgatgaagtagattactacacctttcacaataatcctcaacaaggatct
tctggttatttattggactcagatgactctagttccgatccggcctgggtagaaaggcgg
caaaaattaattaatcgcctgtcaaacgaccttgcaattgctcctgaagatgctgatgat
tttgatgctcttaatgatgaaactttcggagctgcaaccttcgacgaagattgggaacat
caacatgaaaaaatggcctcattgatttctgggccttctcaataccaatcgcctgctggc
ttatcaggcatgcataatcaaccacacacgacgacatcaccttcccctcatcctccatct
tcatcttcatctcaatttttaaatcaaaacaatcttccctgtttcgactctagtaaagtt
ctggactgtcaaaccattgaacagggaatgcacaatttgtcaacatcatccagatcaatt
cctccagaagcagatagacaaaaaatgagctcaaacagctattttttcggcaaaacttca
ttggaaaatcctttcaataatacgccaattagatcaacagaatcaatttggaatactgat
cttgcatctacaaaacttaatcataacgataacactaatattcaaatgacgtcacctatt
ttgatggccaatgttgtaagttcatctatgtgtgcacctgctgaatcatcttcagtaaat
caaccgcgaataattgaaaatgatgacaattcctcttccaggcctgttataaaaagacca
gttagagcagaagatttagaagctatgctgttgaactccgacgtcaatcgtaaaaattct
acttcgacagaaaaatctacaccaaaagcttcagaaagtaatttgaaaaatgaaaaaaat
gatagtggttggagccccttcagtatgggtggtttcatacctaatattcagccttctaca
aatgtaaatacgaatgaccaaaacagtcagcctcaagctccaatcggttatggaaaacca
agctcggtaaattcccgcccatcagctgatgttgacccaaaaaattcagtttctattgga
aagccattcaaaccaatgaccttagatgaattagaaagacatctgttgaatgataatcct
aataatacccaaattgaaacaaaacttgttcaaaatgctggcaataatttgaataaattt
tttcctggtgtagatctaacaaataataaccaagaaaggagagttttacccgaaccagtc
cagccacttgttagttcaactatagtacctccatcaaatgaaacgatcaaccctaaacca
ttgttcagcagtctatttatgcctggaaatagacctcttattcaacaatttgtacctacg
gtcatatctcgtcccccatttgtgccattcttacctggacctattcccaatccattgttc
atccaacatcatcaaatgcaacacttacagcagcttcatcaacgattcgctcatcaacgc
cgacagttttatcctcgaccaggtacaccttaccagcatcacgatagaagttccaacgac
gatgagtacgctggcttaatgactcaaagcaataaagaatggctgataaaaattcaaaat
agtgcattaaatttcacaaacccttataaagaagatttttatttcgtatcttttaaaaca
aaacaattggcaactgctgctaaagctaaaaaaggagacaatggatcaaaagttcctgct
ttaattattccggaaaggaaaattgacgatagtacaaaagtcgaatatgtgctggtacaa
tttgaaggatgtctgggaaaaattcgagtcattgatgtaaaatgtcctcgaaagttgtta
gatgttgatccaaagcacccaaccgaaattgttgatccaagccaagacagaccaatgaca
ccaatcggacgagcagaattgaatgcgttccgtcgcctattattggatattgaacagctc
tatgcacttatgctggaaatagatgaagaggataaaaagatgggcgcccttccagaattt
caacgagtgcctcatgctaacaggcgatccgatctttgcaaccaacttttcaggggcgtt
tatgatgaacaaagtgaaaacataaatcagaagatagccaatgtaaggaaaggcatcgct
ttaattgtaagatcacttcaagttctttccgattcaaaacaaaaagctgctatcgttaaa
agccttttagatagcaataacattcactatgtgactaattatcgagataaaggcctccat
catctagatttcaaagaaattcttacagatgtcattgcctcactgaaagagtctcaactt
ccggagatagacttactttctcgcaaactgaacagtacatcatttttaaattaa
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