Tetranychus urticae (two-spotted spider mite): 107369623
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Entry
107369623 CDS
T04901
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tut
Tetranychus urticae (two-spotted spider mite)
Pathway
tut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107369623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tut03019
]
107369623
Messenger RNA biogenesis [BR:
tut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107369623
mRNA degradation factors
5'-3' decay
Decapping complex
107369623
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
107369623
NCBI-ProteinID:
XP_015793076
UniProt:
T1L2G2
LinkDB
All DBs
Position
Unknown
AA seq
799 aa
AA seq
DB search
MSRVDKVDDYTFHNNPQQGSSGYLLDSDDSSSNPAWVERRQQLMDRLSNDLAIAPEDADE
FDALNDETFGAATFDEDWEQQHEKMASLVSGPSQYQSPAGLSGMHNQPHTTTSPSPHPPS
SSSSQFLNQNNLPCFDSSKVLDCQTIEQGMHNLSTSSRSIPPEANSRQKMSPNSYFFGKT
SLENPFNNAPIRSTESIWNTDLASTKFSHNDNTNIQMTSPVLMANVVSSSMCAPAESSSV
NQPRQIIENDDNSPSRPVIKRPVRAEDLEAMLLNSDHNRKNSTSTEKSTPKASESNLKNE
NNDSGWSPFSMGGFIPNIQPSTNVNSNDQNSQPQASIGYGKPSSINSHPSADVDPKKSVS
NGKPFKPMTLDELERHLLHDNPNNTQIETKPVQNAGNNLNKFFPGVDLTNSNQERRVLPE
PVQPLVSSTNVSPSNETINPKPLFSSLFMPGNRPLIQQFVPAVIPRAPFLPFLPGPIPNP
SFIQHHQMQHLQQLHQRFAHQRRQFYPRPGTRYPHHDRSSNDDEYAGLMTQSNKEWLIKI
QNSALNFTNPYKEDFYFVSFKTKQLATAAKAKKGDNGSKVPALIIPERKNDDSTKVEYVP
VQFEGSLGKIQVSNVKCPRKLLDVDPKHPTKIVDPSQDRPMTPIGRAELNAFRRLLLDIE
QLYALMLEIDEEDKKMGALPEFQRVPHANRRSDLCNQLFRGVYDEQSENINQKIASVRKG
IALIVRSLQVLSDPKQKAAIVKSLLDSNNSHYVTNYRDKGLHHLDFKEILTDVIASLKES
QLPEIDLLSRKLNSTSFLN
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgagcagagttgataaagtagatgactacacctttcacaataatcctcaacaaggatct
tctggttatttattggactcagatgactccagttccaatccggcctgggtagaaaggcgg
caacaattaatggatcgcctctcaaacgaccttgcaattgctcctgaagatgctgatgaa
tttgatgctcttaacgatgaaactttcggagctgcaaccttcgacgaagattgggaacaa
caacatgaaaaaatggcctcattggtttctgggccttctcaataccaatcgcctgctggc
ttatcaggcatgcataatcaaccacacacgacgacatcaccttcccctcatcctccatct
tcatcttcgtctcaatttttaaatcaaaacaatcttccctgtttcgactcgagtaaagtt
ctggactgtcaaaccattgaacagggaatgcacaatttgtctacatcatccagatcaatt
cctccagaagcaaatagtagacaaaaaatgagcccaaacagctattttttcggcaaaact
tcattggaaaaccctttcaataatgcaccaattagatcaacagaatcaatttggaatact
gatcttgcatctacaaaattttctcataacgataacactaatattcaaatgacatcacct
gttttgatggccaatgttgtaagttcatctatgtgtgcacctgctgaatcatcttcagta
aatcaaccgcgacaaataattgaaaatgatgacaattctccttccaggcctgttataaaa
agaccagttagagcagaagatttagaagctatgctgttaaactctgaccacaatcgtaaa
aattctacttcgacagaaaaatctacaccaaaagcttcagaaagtaatttgaaaaatgaa
aacaatgatagtggttggagccccttcagtatgggtggtttcatacctaatattcagcct
tctacaaatgtaaattcgaatgaccaaaacagtcagcctcaagcttcgatcggttatgga
aaaccaagctcgataaattcccatccatcagctgatgttgacccaaaaaaatcagtttct
aatggaaagccattcaaaccaatgaccttagatgaattagaaagacatctgttgcatgat
aatcctaataatacccaaattgagacaaaacctgttcaaaatgctggcaataatttgaat
aaattttttcctggtgtagatttaacaaatagtaaccaagaaaggagagttttgcccgaa
ccagtccagccactcgttagttcaactaatgtatctccatcaaatgaaacgatcaaccct
aaaccattgttcagtagtctatttatgccaggaaatagaccacttattcaacagtttgta
cctgcggtcatacctcgagccccatttttgccattcttacctggacctattcccaatcca
tcgttcattcaacatcatcaaatgcaacacttacagcagcttcatcaacgattcgctcat
caacgccgacagttttatcctcgaccaggtacacgttacccgcatcacgatagaagttcc
aacgacgatgagtacgctggcttaatgactcaaagcaataaagaatggctgataaaaatt
caaaatagtgcattgaatttcacaaacccttataaagaagatttttatttcgtatctttt
aaaacaaaacaattggcaactgctgctaaagctaaaaaaggagacaacggatcaaaagtt
cctgctttaattattccggaaagaaaaaatgacgatagtacaaaagtcgaatatgtgccg
gtacagtttgaaggatctctgggaaagattcaagtctccaatgtgaaatgtcctcgaaaa
ttgttagatgttgatccaaagcacccaaccaaaattgttgatccaagccaagacagacca
atgacaccaatcggacgagcagaattgaatgcgttccgtcgcctattattggatattgaa
cagctctatgcacttatgctggaaatagatgaagaggataaaaagatgggtgcccttcca
gaatttcaacgagtgcctcatgctaacaggcgatccgatctttgcaaccaacttttcagg
ggcgtttatgatgaacaaagtgaaaacattaatcagaagatagccagtgtaaggaaaggc
atcgctttaattgtaagatcacttcaagttctttccgatccaaaacaaaaagctgctatc
gttaaaagccttttagatagcaataacagtcactatgtgactaattatcgagataaaggc
ctccatcatctagatttcaaagaaattcttacggatgtcattgcctcactgaaagagtct
caacttccagagatagacttactttctcgcaaactgaacagtacatcgtttctaaattaa
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