Trichomonas vaginalis: 4745515
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Entry
4745515 CDS
T01022
Symbol
TVAGG3_0714040
Name
(RefSeq) RNA-binding domain, RBD family-containing protein
KO
K13126
polyadenylate-binding protein
Organism
tva
Trichomonas vaginalis
Pathway
tva03015
mRNA surveillance pathway
tva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4745515 (TVAGG3_0714040)
09123 Folding, sorting and degradation
03018 RNA degradation
4745515 (TVAGG3_0714040)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tva03019
]
4745515 (TVAGG3_0714040)
03041 Spliceosome [BR:
tva03041
]
4745515 (TVAGG3_0714040)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
4745515 (TVAGG3_0714040)
mRNA cycle factors
Stress granule specific factors
4745515 (TVAGG3_0714040)
Spliceosome [BR:
tva03041
]
Complex C
Other components
Complex C specific factors
4745515 (TVAGG3_0714040)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
4745515
NCBI-ProteinID:
XP_001300794
UniProt:
A2G4Q4
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All DBs
Position
III:<16578898..>16580395
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AA seq
487 aa
AA seq
DB search
MNSWQKPTRGRHFVLVDTECTKSVDDVTRMFPVKAEFSQHFSRTDLRINVFFISFAEVKT
VKELNLLWPKFNINVAPDNVPNNIGNYLAISNLPNALRDDKIAEELVSLFTDEFTVIEAF
PSLVTVNIPNVKDAIRVFRFLSVLKIGNEITAISMRNEDIPLVRVTNLPKNVNEKLLVEL
FSRAGNITHVDIFKQGGYRRYYVADVSFERVENARYAIKTLNYTIVNEKEIRVSQYISRE
TVREVELNTLVISGLPQYFSSPMLKVLLDSYVPAYQSYMDEIGPHHIRYGIVKYTTEDQA
DHCIAVLNNAAVDGCQIKINRSKRVAICNFAIDTKDEDVLAMAPTSFDLLNLSARDKQKR
PTMYLQFLNEQEMNEGIQKFNSIISNGVRLYAFELKKKRNINSMRSHFVDEQNQHCTVAI
HNINPTATNEEEFVRSCLRYGNIEGYHFAPPVLRVVFSKPEDTQRFVKENRRSWVVGGDK
LSVALSV
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaacagctggcaaaaacccactagaggaagacattttgtactcgttgacaccgagtgt
acaaagtccgtagacgatgtaacaagaatgtttcctgtaaaagcagaattttctcagcat
ttctctcgaacagatctaagaatcaatgttttcttcatttcttttgcagaagtcaagaca
gttaaggagcttaacctactttggccaaaatttaatatcaatgttgctcctgacaatgtt
ccaaataatatcggaaattatttagccatttctaatcttccaaatgctttaagagatgac
aaaattgccgaagagcttgtatctcttttcactgatgaatttactgttatagaagccttt
ccatcccttgttacagttaatattcctaatgtaaaggacgcaattagggttttcaggttc
ctcagtgtacttaagattggcaatgaaatcacagcgatctctatgaggaacgaagatatt
cctcttgtcagagttacgaatcttccaaagaatgtcaacgaaaaacttcttgtcgaatta
ttctcacgtgctggcaacatcacccatgttgatattttcaagcaaggaggctatcgccgc
tactacgtcgctgatgtttcttttgaacgtgtcgaaaacgccagatatgcgatcaaaacc
ctcaactacaccattgtcaatgaaaaagaaatcagagtatcccaatacatctcacgagaa
accgtcagagaggtcgaattgaatacattagtcatttcaggccttccacagtatttcagt
tcaccaatgcttaaagttcttttagattcatacgttcccgcataccaatcttacatggac
gagatcggcccgcatcatatcagatatggcatcgtcaaatatacaacagaagaccaagcc
gaccattgcattgctgttctcaataacgcagcagtcgatggttgccaaatcaagatcaat
cgctcgaagagagtcgcgatatgcaatttcgccattgatacaaaggacgaagacgttctt
gcgatggctccaacatcattcgacctacttaacttgtcagcgcgtgataaacagaagcgt
ccgacaatgtatttgcaattcctgaatgaacaagagatgaatgaaggcattcagaagttc
aacagcatcatatccaatggtgtaagactttacgcattcgagttgaagaagaagagaaat
attaactcgatgaggtctcatttcgttgacgaacagaaccaacactgcactgttgctatc
cataatattaatccaacagcaacaaatgaagaggaatttgttagatcttgcttaagatac
ggaaatatcgagggttaccacttcgctccacctgttttgagagttgttttctctaaaccg
gaggacacacagagatttgttaaggagaatagacgcagctgggttgtaggcggagataag
ttatccgttgcactctctgtttaa
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