Trichomonas vaginalis: 4746215
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Entry
4746215 CDS
T01022
Symbol
TVAGG3_0596890
Name
(RefSeq) RNA helicase protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tva
Trichomonas vaginalis
Pathway
tva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4746215 (TVAGG3_0596890)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tva03019
]
4746215 (TVAGG3_0596890)
03041 Spliceosome [BR:
tva03041
]
4746215 (TVAGG3_0596890)
03009 Ribosome biogenesis [BR:
tva03009
]
4746215 (TVAGG3_0596890)
03016 Transfer RNA biogenesis [BR:
tva03016
]
4746215 (TVAGG3_0596890)
Enzymes [BR:
tva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
4746215 (TVAGG3_0596890)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
4746215 (TVAGG3_0596890)
Spliceosome [BR:
tva03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
4746215 (TVAGG3_0596890)
Complex C
U4/U6.U5 tri-SnRNP related factors
4746215 (TVAGG3_0596890)
Ribosome biogenesis [BR:
tva03009
]
Eukaryotic type
Pre-60S particles
Helicases
4746215 (TVAGG3_0596890)
Transfer RNA biogenesis [BR:
tva03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
4746215 (TVAGG3_0596890)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
DEXQc_Suv3
MTR4-like_stalk
ResIII
Helicase_C
bHLH_IRO3
nSTAND3
LRR_RPS2
DUF6899
Motif
Other DBs
NCBI-GeneID:
4746215
NCBI-ProteinID:
XP_001301484
UniProt:
A2G2R0
LinkDB
All DBs
Position
II:23485496..23488383
Genome browser
AA seq
948 aa
AA seq
DB search
MIAEVPDQYIEAPKATTFQQSSEGDNVLHYVALPDGKTSIDPVDFPKEPLLQYDFELDEF
QKTAVACVHRNESVLVSAHTSAGKTAIALYAIQSAINSNSRVIYTSPIKALSNQKYRELK
EQFGEVGLITGDVTVNSSAPILVMTTEILRMMLYRGDSLIHELSWVIYDEIHYMKDPERG
VVWEESIIMLPDSVHFVFLSATIPNAREFSEWISSIHHQPCHVVYTNHRPTPLKFYISSN
GSEAPALIKEGEGPLDTVAVHTAYSKVKPEEDKSIYKGISVTKLNSGESKPVSRQTTDKL
CAETAAWLVTHDQAPLIVFAFGRKLCDDLPTNLNGKSFVTQEESEQINQMIDVAIEKLED
SEKELPQIQTMRNLLVRGIGVHHGGLIPLLKELIELLFQYGLLKILFATETFAMGLNMPA
RSVLFHSLFKFDGDKRRLLTSSEFIQMSGRAGRRNNDRFGNVILTCTGEPQERPFCDLLT
GIAQPLNSEFHVTYHMLLSLLTSRMMAPELLMKRSFHQFQMEREEPLKEKERDDYARRAS
EIQIKDENKVKQRVVVEDSIEKLKQEKRDLEMSRECLNDILVLGRVVEVGEFGYGIVAAG
FAPKRKDLEIFVAIAGKKNKDGEIVPDPPLRQDSTIFHMKMDANQLTAITDFVIDVHRMT
NDGGLNYAFSKLLKAVNQHKVNKKDWSFVMNNEEKRKKYEKLNSQLEKLNELLPKLQNVP
KEDIQLYRKKQDLQELSKMAAERCNYLKKAVMQRDLQEMKLIIEKLGFVDSEGIITDKGR
VASVITAGDELVMTELLFSGLLNELTSQQIASLMCSFATDEGAKDEPEIPDEMKMPWEKL
KDICERVYNVMLECGRNEPKEKWMGKFDGTYVSLTFNWAAGASFKEIMEENPDTFEGGVI
RTMKRTEEILRQAQRAAAVMGSPELELKILDAITKIKRDIVFAASLYL
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgattgctgaggtgccagatcaatatatagaagcgcctaaggcgactactttccagcaa
tctagtgagggtgataatgttcttcactatgttgcgcttccagatggaaaaacatctata
gatccagttgattttccaaaggaacccttgctacaatacgactttgaacttgacgaattc
caaaaaacagctgtagcatgcgtccatagaaacgaatcagttcttgtttctgcacataca
tcagcaggaaaaaccgcaattgcattatatgccattcaatcagcaattaacagcaattct
cgagtcatatacacatcaccaatcaaagctttatccaaccagaaatacagagagctcaaa
gaacaattcggcgaagttggcttaatcacaggcgacgtaactgttaattctagtgctcca
attctcgtcatgacaacagaaattcttcggatgatgctataccgtggtgattcattgatc
cacgagctttcttgggttatttatgatgaaattcactacatgaaagatccagaacgtggt
gttgtttgggaagaatcaatcattatgcttccagactcagtccacttcgtttttctttca
gcaacaattccaaatgcgagagaattttcagaatggatttcctcaatacaccatcaacca
tgccacgtagtttatacaaatcacagaccaacaccactcaagttttacatatcctcaaac
ggaagtgaagctccagccttaataaaagaaggagaagggccattagacacagttgcagtt
catacagcctattcaaaagtgaaaccagaggaagacaaaagtatttacaaaggaatttcc
gttacaaaattaaattccggcgaatctaagcctgtttcacgccaaacaacagataaacta
tgcgccgaaaccgcagcatggcttgtgacccatgaccaagctcctttgatcgtttttgct
tttggcagaaaattatgcgatgatcttccaacgaatttgaatggaaagtcatttgttaca
caagaagagtccgaacaaatcaaccagatgatcgatgtagccatagaaaagctcgaagac
agcgaaaaagaattacctcaaattcaaacaatgagaaacctcttagttcgcggtattggt
gtccaccatggcggtctcattccattacttaaggaattgatcgagcttctatttcaatac
ggtttattaaaaatcttatttgcgacagagacatttgccatgggtctaaacatgcctgcc
aggtccgtcttattccattccctgttcaaattcgacggagacaagcgaagactccttaca
tctagtgaattcatccaaatgagcggtcgcgccggcagaagaaacaacgacaggttcgga
aatgtcattctcacatgtacaggcgaaccacaagagcgtcctttctgcgatttgctcaca
ggaatcgcccaaccacttaattccgaatttcacgtcacttaccatatgcttttgtccctt
ttgacttcacgtatgatggcacccgaactccttatgaagcgttctttccaccaattccaa
atggagcgcgaggaaccattaaaagaaaaggaaagggacgattacgcgcgaagagcctcc
gaaatccaaatcaaagacgaaaacaaagttaaacaaagggttgttgttgaagattccatt
gaaaaactgaaacaagagaagcgagatctcgaaatgtctcgtgaatgtttgaatgacata
ttagttttaggcagagttgttgaagttggagagttcggatatggaattgtcgctgcagga
ttcgctccaaagcgaaaagacctcgaaatctttgtcgccattgcaggaaagaaaaacaaa
gatggagagattgttcctgatcctcctttgcgacaagattcaacaattttccacatgaaa
atggatgcgaaccaacttacagcaataactgattttgtgattgatgttcaccggatgacg
aatgatggtggattgaactacgctttctccaaactcttgaaagctgtgaaccaacacaaa
gtgaataaaaaagattggtcattcgtaatgaacaatgaagaaaaaaggaaaaaatacgaa
aagctcaattctcaattggaaaaactcaatgaattacttccaaaactccagaatgttcct
aaagaagatatacaactctatagaaagaaacaagatcttcaggaattatctaaaatggct
gcagaaagatgtaattatctcaaaaaagctgtgatgcaaagagatttgcaagaaatgaaa
ctaattatagaaaaattaggtttcgttgacagcgaaggaataattactgataaaggaaga
gttgcttctgttataactgctggtgatgaattagtaatgactgaattacttttctctggt
ttgttgaatgaattaacttctcaacaaattgcttctttgatgtgtagtttcgctacggat
gaaggtgcaaaagatgaacctgaaatccctgacgaaatgaaaatgccgtgggagaaattg
aaggatatatgtgaaagagtgtataacgtgatgttggaatgcggaagaaacgaaccaaaa
gagaaatggatgggtaaattcgatggaacatacgtttctctcacttttaactgggccgca
ggagcttctttcaaggaaataatggaagaaaatccggatactttcgaaggtggagtaatt
agaacaatgaaaagaactgaggaaattctgagacaggctcaaagagctgctgctgttatg
ggatcccctgagttggaattgaagatattagacgcaatcacgaagataaaacgtgatatt
gtttttgctgcttctttatatttgtaa
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