Trichomonas vaginalis: 4749064
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Entry
4749064 CDS
T01022
Symbol
TVAGG3_0544590
Name
(RefSeq) ribonuclease family
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
tva
Trichomonas vaginalis
Pathway
tva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4749064 (TVAGG3_0544590)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tva03019
]
4749064 (TVAGG3_0544590)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
4749064 (TVAGG3_0544590)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_S1
CSD2
PIN_4
SWP7
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
4749064
NCBI-ProteinID:
XP_001304301
UniProt:
A2FUQ4
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All DBs
Position
II:<14536608..>14539199
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AA seq
863 aa
AA seq
DB search
MRTHKVQLLSTRRGNVVRLVREHYLRNDIDCRLPGASENPFTTEDAKFVLAIDSETILNQ
IDALQHQAFTNVVILQTVYEMVRQKSKSIQKNLDKLLSTPEKHFMLFANEHLLETYVEQS
EDQTIQQNHDANIINALNYLQKRFPVKFITNFTKDLDRFKQYNNLDFQIMDIHEFAKDDE
SLASRLTTEDVFAASQAPIYDDYLPSIEVQKLYKEGKVTIGYFSAMQRQHDQGELRNDKE
TILLNDAKSVNRALDGDKIAVITNPESQWVGGYPTGKVVSILSRKSRVICGTVLPPKVQT
NDWQSLLVVPQQENLPKIRIRSRQVQELIGMRVHVAIDSWAINSKYPSGHYISTIGQAGN
LQAESEVILMTNEIPHDAFSDAVLNCLPPKDFQPTPEEVKRRMDLRDRCVCSIDPPGCTD
IDDALHYKDIDEETCEIGVHIADVSFFVREGTAIDLEARDRGTTVYLVEKRIHMLPSLLS
EDLCSIRGGIERLAFSVVAIMNKKTAETIDVKFGKSIIKSRAALSYGRAQEIVEDQNDQS
ELAKGIRGLLALSKIMNKKRMDDGALTLSSPQLHFTLDSETAEPLSGELYQHLEVNSLVE
EFMLYANIEVAKKIYETFKQSAMLRRHESPIAARFDFLNRALKRFGVQLNPDTNKSLVET
LDGVGEKVKDLDNIVRIMTTRCMQFAKYFAAGTQSYENFRHYGLAMPIYTHFTSPIRRYA
DLIVHRQLAAAIGYDKATDMLASKLMMQAVAENLNFRHKMAQDAGRSSSQLFIMEMLRRT
PGKIEEGKVIKIKPTVFVILLEQYGVEGHVHVDGEKWIYNETEESLEKDGKRICIFDKVR
VRVNVTPINMHGRSRLDLELIEE
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgagaacacacaaagtacaattattatcaaccagaagaggcaatgtagttagactcgtt
agagagcactatttgcgaaatgacattgattgccgtcttccaggcgcttcagaaaatcca
tttacaactgaagatgcaaaattcgtactagcaattgattctgagacaattttgaatcag
attgatgctctccagcatcaagcattcacaaatgttgtcattcttcaaacagtttatgaa
atggtaagacaaaaatcaaaatccatacagaaaaacttagacaaactattatcaacacca
gagaagcattttatgctctttgcaaacgagcatcttctcgaaacatacgtagaacaatct
gaagatcaaacaattcaacaaaatcatgacgcaaacattatcaatgcacttaattatctt
caaaaacgctttccagtcaaatttattaccaactttactaaagatttagacagatttaaa
caatataacaatttagacttccaaatcatggatattcacgaatttgccaaagatgatgaa
tctcttgcttcacgtcttactacagaagatgtctttgcagcaagccaagcccctatttac
gatgattatcttccaagtatcgaagtccaaaaactttacaaggaaggcaaagttacaatt
ggctatttcagtgccatgcaacgtcagcatgaccaaggcgagctcagaaacgacaaagaa
acaatattattaaatgatgcgaaatccgtcaacagagcacttgatggcgacaagattgcc
gtgatcaccaacccagaatctcaatgggtaggtggttatccgacaggaaaagtcgtttcc
attctctccaggaagtcaagagtgatttgtggcactgttttacctccaaaagtccaaaca
aacgattggcagtcattacttgttgttccacagcaagaaaaccttccaaagatcaggatc
cggtcccgccaagtccaagaattgataggaatgcgtgtacacgttgcaattgactcatgg
gcaatcaattccaaatatcctagtggccattacatttcaacaattggtcaggcaggaaat
ttacaagccgaaagtgaagtgattctcatgaccaacgaaattccacatgacgcattcagt
gacgcagttttgaactgtttgccaccaaaagatttccagccaacaccagaagaagtcaag
cgaagaatggacttgagggacagatgcgtttgttccatcgatcctccgggatgtacagat
atcgatgatgcattacattacaaagacatcgatgaagaaacatgcgaaatcggtgttcat
atcgctgatgtgtcattttttgtcagggaaggaactgcgattgatttggaagccagagac
agaggaacaacagtttacttggttgagaagagaatccacatgcttccttctcttttgtct
gaagatttgtgctcaattagaggaggaatcgagagattggcattttctgttgtcgcaatt
atgaacaaaaagacagcggaaacaatcgatgtcaaatttggaaaatccatcatcaaatca
agagcggcattgagttacggaagagctcaggagatcgtggaagaccagaacgaccaaagc
gaactcgcaaagggaataagaggactattggcactctcaaagatcatgaacaaaaagaga
atggatgatggagctttgactttgtcttctcctcaacttcacttcactttagattcagaa
acagctgaaccattgagtggagaattataccaacatttagaggtcaactcccttgtcgaa
gagttcatgttgtacgcaaacatcgaagtcgcgaagaagatctacgaaacattcaaacaa
tccgccatgttgagaagacacgaatctccaattgccgcgagatttgatttcttaaacaga
gctttgaagagattcggagttcaattgaatccagacacgaataagtcattggttgagact
ctcgatggtgtcggagagaaagtcaaagacttggacaatatcgtgagaataatgacaaca
agatgcatgcagttcgccaaatatttcgctgctggaacacaaagttatgaaaatttcaga
cactacggtttggccatgccaatttacactcacttcacttcacctattagaagatatgca
gatcttattgtccacagacaattggcagcagcaatcggatacgacaaagccacagatatg
ttggcaagcaagttaatgatgcaggctgttgcagaaaatttgaatttcagacacaaaatg
gctcaagacgcaggaagaagttcttctcagctgttcatcatggaaatgcttaggagaaca
cctggaaagatcgaggaaggaaaggttattaagatcaagccaacagtgttcgtgattttg
cttgaacaatacggtgtcgaaggacacgttcatgtcgatggagaaaaatggatttacaac
gaaacagaagaatctctcgagaaggatggaaagagaatttgtattttcgataaagttaga
gtaagagttaatgtaacacctattaacatgcatggtagatctagattagatttagaactt
attgaagaataa
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