Trichomonas vaginalis: 4754740
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Entry
4754740 CDS
T01022
Symbol
TVAGG3_0563160
Name
(RefSeq) transcription-dependent tethering of RNA polymerase II gene DNA protein
KO
K14298
mRNA export factor
Organism
tva
Trichomonas vaginalis
Pathway
tva03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
4754740 (TVAGG3_0563160)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tva03019
]
4754740 (TVAGG3_0563160)
03036 Chromosome and associated proteins [BR:
tva03036
]
4754740 (TVAGG3_0563160)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
4754740 (TVAGG3_0563160)
Chromosome and associated proteins [BR:
tva03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
4754740 (TVAGG3_0563160)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
ANAPC4_WD40
WD40_CDC20-Fz
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
EIF3I
Beta-prop_WDR19_1st
Beta-prop_Vps41
Pectate_lyase22
PD40
Beta-prop_WDR35_TULP_N
Beta-prop_EIPR1
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
4754740
NCBI-ProteinID:
XP_001309893
UniProt:
A2FDR3
LinkDB
All DBs
Position
II:complement(17770079..17771148)
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AA seq
347 aa
AA seq
DB search
MSITLDNPPDETISDLAFSPSGNYIAASSWDGTARIWELNDTFTNQQYKFKASEKQEAIT
RIAWDPDGSKLYYGTTEAKIKSLDNVSGKTDEIANLAPCGRISGLKYSEVTGGLIAATAR
GYIILVFPDKSEPKLIFDPNASKTGASSMADLSIINIAVGQNYLFFIGNHTTPKPDLSPT
DQVFYSGNLAPANGIFEVKPVNHQLTSQLMALAVSQDDQEWVIGSITGQIEYKSENDTET
KVEKGHRNDTTKDMYAVNCLAFSPERPFIASGGGDSSIIFISPRNKRFKAIKGNGKTPTA
IAFSYTNGALAIATGYDYSQGSSAYYKSKEQNAPEIIIKKLTQTDYV
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgtctataactcttgataacccacctgatgaaactatttcagatttagcgttttctcca
agtggaaattacattgcagcatcttcatgggatggtactgctcgaatttgggaacttaat
gatacttttacaaatcagcaatataaattcaaagctagcgaaaaacaagaagctattacg
agaattgcatgggatcctgatggttccaagctatattacggcactaccgaagctaaaatt
aagtcattagataatgtttcaggtaaaacagatgaaattgcaaatttggctccatgtgga
cgtatatcaggacttaagtatagtgaagtcactggtggtcttatcgctgctacagccaga
ggctatattattttagtttttccagataagtcagaaccaaagctcatcttcgatccaaac
gccagcaaaacaggtgcctcaagcatggctgatttatcaatcataaatatcgctgtcggc
caaaattatctatttttcatcggaaaccatacaacaccaaagcccgatttatcccctaca
gaccaggtattctactccggtaacttggcccctgcaaatggtattttcgaagtaaaacca
gtaaatcatcaacttacgagccaattgatggctttggccgtttcccaggacgaccaagag
tgggtgatcggaagtatcaccggacaaatcgaatataagtcagaaaacgatacagaaaca
aaagtagaaaaaggacatcgtaatgatacaaccaaggacatgtacgcagttaactgcctt
gccttctcgccagaaagaccattcattgcttctggcggcggagattcttcaattattttc
atcagcccaagaaataaacgtttcaaagctattaagggtaatggaaagacaccaacagct
atcgcatttagctatacaaatggtgcacttgcgattgcaaccggatatgattattctcaa
ggatcttcagcatattataagtctaaagagcaaaatgcacccgaaatcatcattaagaaa
ctcacacaaacagattatgtataa
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