Trichomonas vaginalis: 4755203
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Entry
4755203 CDS
T01022
Symbol
TVAGG3_0498420
Name
(RefSeq) cleavage and polyadenylation specificity factor family member family
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
tva
Trichomonas vaginalis
Pathway
tva03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4755203 (TVAGG3_0498420)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tva03021
]
4755203 (TVAGG3_0498420)
03019 Messenger RNA biogenesis [BR:
tva03019
]
4755203 (TVAGG3_0498420)
Transcription machinery [BR:
tva03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
4755203 (TVAGG3_0498420)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
4755203 (TVAGG3_0498420)
U7-dependent histone pre-mRNA processing factors
4755203 (TVAGG3_0498420)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-Casp
Lactamase_B_6
CPSF73-100_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Beta_lactamase3
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
4755203
NCBI-ProteinID:
XP_001310348
UniProt:
A2FCF8
LinkDB
All DBs
Position
II:complement(<6744958..>6747061)
Genome browser
AA seq
679 aa
AA seq
DB search
MQEVQVGEDKLTVMPLGAGQEVGRSCIILKYHRKRVMLDCGIHPAYENFGGLPFIDAIDP
AKIDVLLITHFHIDHITAVPWFLTQTNFSGPCFMTHTTKTISKTLLVDYVGVSGRGSEEP
NLFTRADVANVQNMITAVNYHQTVTHQGIKMTCYPAGHVLGACMWLVEIDGVKVLYTGDF
SLENERHLQGAEIPKSLSGEIIRPDVLIMESTHGLARIESRVDREYRFIDNVTKIIKRGG
RCLIPIFALGRAQELLIILDEYWESHPEYNGVPIYYGSNLAKQAIAAYNAFYQDHNSRVV
TAKGKFEFSYVKYIRDYDFDDSLPCVVLCSPAMLQNGMSRKIFEAWCSNSVNGLIIPGYI
VDGTLPQVLMKNPAEITTLSGKIIPRKISIDYVSFSGHADFNQTSRFITELKPKRIVLIH
GVCGLMMQLKEKLLQMFVEDGLEVYTPGLCEKATMWFQSNPSAIITGGLSDNKDNISGII
VRKDGQNMIMSASELSTHTTLKTLNATMSQEVPINKPLSEYTKLLQNEFGKVQVVSKKLV
LIMERLMLIYKDKETAILKWNADPTLDYLANAVTSLIMCYNDSGEKISLSDTTPEDLFVQ
KLQEALRERYSKDIEFDPDSQMFMFQISEKSVIICIDSESPSGVKVECDKQDERLELELN
ELATTLHEFCQPLTLHQVR
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaagtacaagttggagaggacaaactgactgttatgccgctaggagccggccaa
gaagtcggtcgtagttgcattattctcaaataccacagaaagagagtcatgctcgattgt
ggaattcatcctgcctacgaaaatttcggcggccttccatttatagacgcaattgatcct
gcaaaaatagatgttttgcttattactcacttccacattgatcatattacagcagttcca
tggtttttaactcaaactaatttcagcggtccttgcttcatgacacacacaacaaaaact
atttcaaaaacacttcttgtcgattatgtcggtgtttcaggccgtggaagtgaagaacca
aatctttttacacgtgcagatgttgcaaatgttcaaaacatgatcacagcagtaaactat
catcaaacagttactcaccaaggtatcaagatgacatgctaccctgcaggacacgtccta
ggtgcttgcatgtggcttgttgaaattgatggtgtcaaagttctttacacaggcgatttc
tctctcgaaaacgagcgccatcttcaaggtgccgaaataccgaagagcctttccggcgaa
attattcgtcctgatgtactaattatggaatcaacacatggtttagcaagaattgagtca
agagtcgacagagaatacagattcatcgataacgttactaagatcatcaagcgtggtggt
cgttgcttgatcccgatcttcgctttaggcagagctcaagaattactaattattctcgac
gaatattgggaatcccacccagaatacaacggagttcccatctactatggctcaaacctc
gccaaacaagctattgcggcttacaatgctttctatcaagatcataattcaagagttgtc
acagctaagggaaaattcgaattttcttatgttaaatacatcagagattacgacttcgat
gattccctcccttgcgtggtcctctgttcccctgctatgcttcaaaatggaatgagtcgg
aaaatttttgaggcctggtgctcgaattcggtcaacggactgatcattcccggctacatt
gtcgatggaacacttccgcaagtgcttatgaagaacccagccgaaattacaacattaagt
ggaaaaattattccgagaaagatctcgatagactatgtttcgttctccggacatgcagat
ttcaaccaaacctcccgtttcatcaccgaattgaagccgaaaaggatagttttgatacat
ggagtttgtggcttgatgatgcagctcaaggagaagcttctacagatgttcgttgaagat
ggcttggaagtttatacgcctggattatgcgaaaaagcaacaatgtggttccaatctaac
ccatccgcgattattaccggcggtttgagcgataacaaggacaatatatcaggcatcatt
gttagaaaggacggacagaacatgatcatgtccgcttctgaactttctacgcatacaact
ctaaaaacactaaatgcaacgatgtctcaagaagttccgatcaacaaaccactatcagaa
tatacgaaattactacagaatgagttcggcaaggtccaggtcgtctcaaagaagctggtt
ctcattatggaaagattaatgctgatttacaaggacaaagagacagcaatattgaagtgg
aacgctgatccaacattggactacctcgcaaatgccgtaacttcgctcattatgtgttat
aatgattctggagaaaaaatttcgttgtcagacactactcctgaagatctcttcgttcag
aaattgcaggaggcattacgagagaggtacagcaaggacattgagttcgatcctgacagc
caaatgtttatgttccagatttcggaaaaatctgtcatcatttgcatagattctgaatct
ccaagtggtgtaaaagtcgaatgcgataaacaggacgaaagattggaactggaattgaac
gaattggcaacaactttacatgaattctgccaaccattgactttacatcaggttagatag
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