Trichomonas vaginalis: 4755620
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Entry
4755620 CDS
T01022
Symbol
TVAGG3_0995750
Name
(RefSeq) ATP-dependent RNA and DNA helicase family
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tva
Trichomonas vaginalis
Pathway
tva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4755620 (TVAGG3_0995750)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tva03019
]
4755620 (TVAGG3_0995750)
03041 Spliceosome [BR:
tva03041
]
4755620 (TVAGG3_0995750)
03009 Ribosome biogenesis [BR:
tva03009
]
4755620 (TVAGG3_0995750)
03016 Transfer RNA biogenesis [BR:
tva03016
]
4755620 (TVAGG3_0995750)
Enzymes [BR:
tva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
4755620 (TVAGG3_0995750)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
4755620 (TVAGG3_0995750)
Spliceosome [BR:
tva03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
4755620 (TVAGG3_0995750)
Complex C
U4/U6.U5 tri-SnRNP related factors
4755620 (TVAGG3_0995750)
Ribosome biogenesis [BR:
tva03009
]
Eukaryotic type
Pre-60S particles
Helicases
4755620 (TVAGG3_0995750)
Transfer RNA biogenesis [BR:
tva03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
4755620 (TVAGG3_0995750)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4-like_stalk
MTR4_beta-barrel
Helicase_C
ResIII
DEXQc_Suv3
nSTAND3
CCDC-167
AAA_22
Motif
Other DBs
NCBI-GeneID:
4755620
NCBI-ProteinID:
XP_001310762
UniProt:
A2FBA2
LinkDB
All DBs
Position
I:complement(16209214..16212111)
Genome browser
AA seq
965 aa
AA seq
DB search
MKSSAIEDLIPKAPQASTVKFEIEGDNVLHFAALPDGTHTLEDVKFPEEPYLKYDFEFDE
FQKCAIACVHNKESVLVSAHTSAGKTVIAKYAIVSALQNNSRVVYTSPIKALSNQKYKEL
ADEFEPRFGKGCVGLLTGDVTINPSASVLVMTTEILRMMLFMQDTLIRELSWVVYDEVHY
MKDRSRGVVWEESIIMLPDDVRFVFLSATIPNAREFSEWIATTHKQVCHVVYTERRPVPL
HFYLSPLGQPKPYMVRNAEGEINDQQFALACASVKSNAGASKTFGSVQVKSSETTKSKVS
KKALGQHTCKIIENLYNSNLYPMIVFVFSRKECDNIHESLGERTFLKPEEKYYVTEVFQN
AIQRIPNEADRNLPQIKHMKRLVERGIGVHHGGLMPILKEVVELLFQYHLIKVLFATETF
SMGLNMPAKTVVFNSLQKFDGNELRTIHTSEFIQMAGRAGRRNKDQFGAVVINYGGEPSP
ADLKALMTSGAQPLNSEFRVTYNMILNSLTSANGNPKRIMRSSFHQFQMERQIPELKRRL
NEIKTQADAIELTDAEKTKLKVEMQEKLRLLQNKMKKMIFDEENAKNFLIPGKIVKLREW
GYCVVVTPPHKGVLTVISNAVTTIEGNVVPPSKSKAKSQPTLISVGLTEFEEVSPHIVTV
SFDSLNNKMVSQIMKSVDNMAKSGISNVNHRDLCNEKFREEYLKSEEEYNRLLDSVHALG
DVDEKTLHDFITKRNLEDEIETLNKKISDMELLANQGDLDAMMQLLLQLGFVEEVETMEG
KGVVITLKGRVAASVNSCDEIVITELLVNGWIKPEYSASMICSILSCFISEEKNDKPDLE
GYEDQWKTLQNTASKIADMSLACGVPLDKEIFMSQFNPSFVKLVESWAMGADFQSIMKDY
PTYYEGSIVRTIKRLDELLGQVSKAADIFGNKSLAEYIEKEARPLINRGIVFTKSLYLNE
EIKKD
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcttcggcgattgaagatttaatcccgaaggctccacaagcgtccactgtgaag
ttcgaaattgaaggtgacaacgtcctccacttcgctgcgcttccagatggtacacatacg
cttgaagatgtcaaatttcctgaagaaccatacttaaagtacgattttgaatttgatgaa
ttccaaaaatgcgctatagcatgcgtacacaataaagaatcagtactagtttccgcacac
acatcagctggtaaaactgttattgccaaatacgccattgtctcagcattacagaacaat
tcacgcgtcgtttatacatcacccatcaaagctctttccaatcagaaatacaaagagctt
gctgatgaatttgaaccaagatttggcaaaggctgcgttggccttttaactggtgatgtt
acaatcaatccaagcgcatcagtactcgtcatgacaaccgaaattcttagaatgatgctc
ttcatgcaagatactttaattcgtgagttatcatgggttgtttacgatgaagttcactac
atgaaagatcgtagtcgcggcgttgtttgggaagagtcaatcatcatgctcccagacgat
gtcagattcgtatttctttcagccacaattccaaatgcacgcgaattcagtgaatggatt
gccactacgcacaaacaagtatgtcacgtagtttacacagaacgccgtccagtacctctc
cacttctatctttcacctttaggacagccaaaaccttatatggtgagaaatgcagaggga
gagatcaacgaccagcaatttgctcttgcctgcgcaagtgttaagtcgaatgccggcgct
tccaagacatttggcagcgtacaagtcaaatcttctgaaactacaaaatcaaaagtctca
aaaaaggctcttggccaacatacatgcaaaataatcgagaacttatacaactccaacctc
tacccaatgatcgttttcgtgtttagccgcaaagaatgcgataatattcacgaatctctt
ggcgaacgtacatttttgaagccagaagaaaaatactacgttactgaggtcttccagaac
gctatccaaagaattccaaacgaagccgaccgaaatcttccccaaattaaacacatgaaa
agacttgttgaacgtggtattggagtccaccatggcggtctcatgccgattcttaaggaa
gttgttgaacttttgttccaatatcaccttatcaaagttttgtttgccacggagacattt
tccatgggattgaatatgccggccaaaaccgtcgtattcaattcccttcagaaattcgat
ggaaacgaacttcgtactattcatacttcggaattcatccaaatggccggcagagcaggc
cgtagaaacaaagatcagttcggtgctgttgtcatcaactacggcggagagccatcacca
gcagatttgaaggctttgatgacatctggtgctcagccattgaacagtgagttccgagtc
acatacaacatgattcttaactcccttacaagtgccaatggcaatccaaagagaatcatg
cgctcttctttccaccaattccaaatggaaagacaaattcctgaattaaagcgcagattg
aacgaaatcaagacacaagcagatgcaatcgaacttacagatgcagagaagacaaagctc
aaggtcgaaatgcaagaaaaactccgtttactccaaaacaaaatgaaaaagatgattttt
gatgaagaaaacgctaagaatttcttaatcccagggaaaattgtgaaattaagggagtgg
ggttattgtgtagtggtgactccccctcataaaggtgttcttactgttatttcgaatgct
gttacgacaatagaaggaaatgttgttcctccatcaaaaagcaaagctaaatcacagcca
acattgatctctgttggtcttacagagtttgaagaagtgtctccacatattgtcactgtt
tcttttgattcattgaacaacaaaatggtttctcagataatgaaatcagttgataacatg
gcaaaaagtggaatttccaatgtaaatcatcgtgatttatgcaatgaaaaattcagagaa
gaatatcttaaatctgaagaagaatacaacagattattagattcagttcatgcattagga
gatgttgatgaaaagactcttcacgatttcattacgaaaagaaatcttgaagatgaaatc
gagacattaaacaagaagatttctgatatggaattactcgcaaaccaaggagatttggat
gcaatgatgcagcttttgttacaactcggtttcgttgaagaagttgaaacaatggaagga
aaaggagttgtaattacattgaaaggaagagttgctgcatcagttaattcttgtgatgaa
attgttattactgaattattagttaatggttggataaaacctgaatactctgcatcaatg
atttgttctattttgtcttgtttcatcagcgaagaaaagaatgacaaaccagatctcgaa
ggatacgaagaccaatggaaaacacttcagaacacagcgtcaaagatcgcagacatgagt
ttggcgtgcggtgttcccttggacaaagaaattttcatgtcacagttcaatccaagtttc
gtgaaactagttgagagttgggcaatgggtgctgatttccagtcaataatgaaggattat
ccgacatattacgaaggatcaatcgtcagaacaatcaagagattggacgaattacttgga
caagtttcaaaggctgctgacattttcggaaacaaatctctcgcagaatacatagagaaa
gaggcaaggcctttgataaacagaggtattgtgttcacaaagtctctttacctcaatgaa
gaaatcaaaaaagattaa
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integrated database retrieval system
