Trichomonas vaginalis: 4755943
Help
Entry
4755943 CDS
T01022
Symbol
TVAGG3_0916830
Name
(RefSeq) Rad50 family
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tva
Trichomonas vaginalis
Pathway
tva03440
Homologous recombination
tva03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
4755943 (TVAGG3_0916830)
03450 Non-homologous end-joining
4755943 (TVAGG3_0916830)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tva03032
]
4755943 (TVAGG3_0916830)
03400 DNA repair and recombination proteins [BR:
tva03400
]
4755943 (TVAGG3_0916830)
DNA replication proteins [BR:
tva03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
4755943 (TVAGG3_0916830)
DNA repair and recombination proteins [BR:
tva03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
4755943 (TVAGG3_0916830)
BRCA1-C complex
4755943 (TVAGG3_0916830)
NHEJ (non-homologous end-joining)
MRX complex
4755943 (TVAGG3_0916830)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_29
SbcC_Walker_B
Rad50_zn_hook
ERM_helical
AAA_18
OVT1
ABC_tran
AAA_30
AAA_22
AAA_16
Zn-C2H2_12
Motif
Other DBs
NCBI-GeneID:
4755943
NCBI-ProteinID:
XP_001311080
UniProt:
A2FAD3
LinkDB
All DBs
Position
I:complement(2722385..2726409)
Genome browser
AA seq
1292 aa
AA seq
DB search
MSKLISLTIKGIRLFNPEPKEEYKQTINFDNNIILITGPNGSGKTTIFESLQYALTGLCR
KKSAGIGFFYDINVLGKKDYMAECRLKFQAVDGKIYEIVRKTKISKSGKKSKLKTQESKI
LDEHQKEVYSKPDTVEQQIPRLLGIPKAILENVIFCQQTDQCWPIELNDKDLKLRFDTIF
GSDNYESAIGQIKELKKNKDKELVQLQKEEINYNKDYEQKVKNEEDLLKKTREINEIEQE
KKEIDVDLTRLHQIADNIEEKQGKIKDLENVISQKEGQLKIIKESIDSFEMNHERVQMTI
SSCEDLKASLESELQSNRETINLAKSQIEMKKHDYERVKREITERTQKLKDLKSKSENFN
FEKTNFEKLISDFKNNYGTDDYQEYYKKIESENSSKTENLKKLKRDIQNLENDFKNEQEK
QREEVDEHNRQLTEVKTELKSYDEQLNKLEDYSQEGYENLIKETQLAKDKLDAELRSDDS
YDKISSKINEINNENKNINKSLTEKKEIIKKLESQRSINNQINDNEQKISKNKKEIKSKI
NEIKELIHEEIDEENFSKIIKEKQKSLNNEENSIRVETDKEKTKYEKSQIELDSKEKSLE
NKNKTKNDIESDLIENLGSTDFENEYKKYKNEQENLQKLISLDTKSQSIYEEFVSESRSE
SCQCPLCKRKFKDNSERDEFIKNELEKVLKDLPSKIASNEEKLRKVSEKIESIENLRDKH
FIYQQVLEDIPKLEEEIDTLKSKRDQNFEEYQQIKQNYDEIRSKKEKFEHEVIPKKNDVE
RLISYVSKYESENDNLRSKLNKDLPNLSVIEEEKRILEDKSQNLQTEQANLMKKLTEASD
RKSKLQSRYNEVNNKLNDYKSKFDDKNKIKEKRQKRGIKKRDIENKLIEIERINKEMNEA
NAQNLESIKKATNELQLDVDKLNNDFIKIKNDFEKISKSKETISKYSVDETNRKIYELEK
TIKENEDSLQQLDENLKKWEKKQEADQQNMDEIKIKLEENNLVHDYLQKVQKYKEIEHEK
EELLRELSGFANIDDLKNIDRIKQEILNKEKRSSELQGSYSHLDKELKDLSKILNNRYKD
TNNNLTEIRLKIAATEMTIKDLTKFAEQLNNSIMEYHQRKVLEINELLKAFWEKSYQSMD
IENISIVAHSSTENNESKSGRISYDYKVVMFKSGQEVEMSGRCSEGQKVLASLIIRMALA
KAFGCSILALDEPTTNLDSDHMSNFAFLLSNDFKTMLENQQLLLITHSGDFVDKVSTDSD
IQHFYQLEIESIDGHSFSCIHQKDSKYLQMDQ
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagttaataagtttaacaataaaaggtatcaggttattcaatccagaacctaaa
gaagaatacaaacagaccattaatttcgataataatattattttaatcacaggtccaaat
ggatctggaaaaacaacaatatttgagtcattacaatacgcattgacaggattatgtcgt
aagaagtctgcaggtattggattcttctacgatatcaatgttcttggcaagaaagactac
atggctgaatgcagattaaaattccaagcagtagatggcaagatatacgaaattgtacgc
aagactaagatttccaagtccggaaagaagtccaaactgaagacacaagagtcaaaaatc
cttgacgagcaccaaaaagaagtttattcaaaaccagacacagtcgaacaacaaatacca
cgcttacttggcattcctaaggccatccttgagaatgtcatcttctgccagcagacagac
caatgttggccgatcgaattgaatgataaagatcttaaattacgttttgacacaattttc
ggctcagacaactacgaatccgccattggccagatcaaagagctcaagaagaacaaggac
aaagagctcgtccagctccagaaagaagaaataaattataacaaagattacgaacaaaaa
gtgaagaatgaagaagatctgctcaagaaaactagggaaatcaacgaaatcgagcaagaa
aagaaggaaatcgatgtagatttaacaagattacatcaaattgccgataacattgaagag
aaacaaggaaagatcaaagaccttgaaaacgtaatttcccagaaagaaggacaactcaag
atcatcaaagaatcaatagattcatttgaaatgaaccatgaaagggtccaaatgacaatt
tctagttgcgaagatctcaaggcatcactagaaagcgaactccagtcaaacagagaaaca
atcaatttggctaaatctcaaatcgaaatgaagaaacacgattacgagagagtcaaacga
gaaataaccgaaaggacacaaaaattgaaagatctcaagtcaaaatccgaaaatttcaat
tttgaaaaaacaaattttgaaaaattaatttcggatttcaagaataactatggtacagat
gattaccaagagtactacaagaagatcgaatcagagaattcatcaaaaacagaaaatttg
aagaaattaaaacgagatatccaaaatctcgaaaatgatttcaaaaacgaacaagaaaaa
caaagagaagaagtcgacgaacacaacagacaactgactgaagtaaagacagagctgaaa
tcatatgatgaacaattgaataaattagaagattattcacaagaaggatatgagaatctg
atcaaagaaacacaactagctaaagacaaacttgatgctgaactaagaagtgatgattca
tatgataaaatctcatcaaaaatcaatgaaatcaacaatgaaaacaaaaatatcaataaa
tcattgacagaaaagaaagaaatcattaagaaattggagagtcaaagatcaataaataat
caaattaatgataatgaacagaagatatctaaaaataagaaagaaatcaaatcaaaaatc
aatgaaatcaaagaattgattcatgaagagattgatgaagaaaatttctcaaaaatcatc
aaggaaaaacaaaaatcattgaacaacgaagaaaattctattcgtgtcgaaacagacaaa
gaaaagactaaatatgaaaaaagtcaaatcgaattagattctaaagaaaaatcacttgaa
aacaaaaataaaacaaaaaatgacattgaatcagatttaatcgaaaatcttggaagtacc
gattttgaaaacgagtacaaaaagtacaaaaatgaacaagaaaatcttcaaaaacttatt
tcacttgacacaaaaagtcaaagtatctatgaagaatttgtttcagagagtcgaagtgaa
tcatgccaatgtcctctttgcaagagaaagttcaaagataactcagaacgtgacgaattc
atcaaaaacgaacttgaaaaagttttgaaagatcttccttcaaaaatcgcatcaaatgaa
gaaaaattgagaaaagtcagcgaaaaaattgagagtattgaaaatcttcgagacaaacat
tttatttatcaacaagttttagaagatattcctaaacttgaagaagaaatcgataccttg
aaatctaaaagagatcaaaacttcgaagaatatcagcaaatcaaacaaaattatgatgaa
attcgatctaaaaaagaaaaatttgaacatgaagtcattcctaagaagaacgatgtagaa
agattgatttcttatgttagtaaatacgaatcagaaaatgataatttgagatcaaaactc
aacaaagatttgccaaatttgtctgtaattgaagaagaaaaaagaattttggaagataaa
tctcaaaatttacaaacagaacaagcaaatttaatgaagaaattgacagaagcaagtgac
agaaaatcaaaactacaaagtcgttataatgaagtaaataataaattaaacgactacaaa
tcaaaatttgatgataaaaataaaattaaagaaaaaagacaaaaacgtggcatcaaaaaa
cgtgacatcgaaaataaattgatcgaaattgagagaataaacaaagaaatgaatgaagct
aatgcacagaaccttgagagtattaagaaagctacgaatgaactccaactagatgtagac
aaactaaacaatgatttcataaaaatcaagaatgattttgagaaaatttctaaatcgaaa
gaaacaatttcgaaatattctgtagatgaaacaaacagaaagatctacgaacttgagaaa
acaatcaaagaaaacgaagacagtttgcagcaattagatgagaacttaaagaaatgggaa
aagaaacaagaagctgatcaacaaaacatggatgaaatcaaaattaaattggaagaaaat
aatttagttcatgactatttacaaaaggtgcagaaatataaagaaatcgagcatgaaaaa
gaggaattattaagagaattatctggatttgcaaatatcgatgatcttaaaaacatcgat
agaatcaaacaagaaatattaaataaagaaaagagatcaagtgaattacaaggttcttat
tcacatctggataaagaactcaaggatttgtcaaaaatattgaataatagatataaagac
acaaataataatttgacagaaataaggttaaaaatagccgcaacggaaatgacgataaaa
gatctgacaaaatttgctgagcagttgaataattccattatggaatatcatcaacggaaa
gtacttgaaatcaatgaattactcaaagcgttttgggaaaaatcgtatcaaagcatggac
attgaaaatatttctatcgtcgcacattcaagtactgaaaataatgagagtaaaagtggc
agaatttcatatgactacaaagttgtcatgttcaagagcggccaagaagtagagatgagc
ggaagatgcagcgaaggccagaaagtattggcaagtttgataataagaatggcgttggcg
aaagcatttggttgcagcattttggctttagatgaaccaacaacgaatttggatagtgat
catatgagtaatttcgcgtttttgttgtcgaatgatttcaagactatgcttgaaaatcaa
caacttctgttgattactcactctggagatttcgttgataaagtcagcactgatagcgat
attcaacacttttatcaacttgaaatcgagtctatcgatggacactcattctcttgtatc
catcagaaggattctaaatatttgcagatggatcaataa
DBGET
integrated database retrieval system
