Trichomonas vaginalis: 4759070
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Entry
4759070 CDS
T01022
Symbol
TVAGG3_0947740
Name
(RefSeq) U1 snRNA 3'-end processing
KO
K12589
exosome complex component RRP42
Organism
tva
Trichomonas vaginalis
Pathway
tva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4759070 (TVAGG3_0947740)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tva03019
]
4759070 (TVAGG3_0947740)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
4759070 (TVAGG3_0947740)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
4759070 (TVAGG3_0947740)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
4759070
NCBI-ProteinID:
XP_001314060
UniProt:
A2F1F8
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All DBs
Position
I:7703259..7704221
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AA seq
263 aa
AA seq
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MQTLTLSPGERTFQCEMLARNMRMDGREFLQSRTHEIELNPLPLSPSSCKVIKGHGYSNT
TEVIVSINTEVALNEHAEFDLSVKSLPGAFGPNLEDAEICQVIKTTIKHFLVNSEVLEPN
QFILFNSPYSWKIYIDVLILKAAGGVYEASMLGIESCLQNITFPALIVTPGESANELHFD
IDESKKAEHLIKVEKIPKLYTFAAYQDKLIIDPTPAEVTSVQSLIVIGASKDGSMLGMNH
FGESGLRESLLGQITEVVKSLSA
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacattgactctctcaccaggagaaaggacatttcaatgtgagatgcttgcaaga
aatatgcgtatggatggaagagaattccttcaatcaagaactcacgaaattgagttaaat
ccacttccattatcaccatctagctgcaaagtaattaaaggacacggatacagcaacaca
acagaagtaattgtttcaatcaatacagaagttgccttaaacgagcacgcagagtttgat
ttatcagtcaaatctttaccaggtgcttttggaccaaatttggaagatgctgaaatctgc
caagttattaaaacaacaatcaagcatttccttgtaaacagtgaagttcttgagccaaat
cagttcattcttttcaactctccttattcctggaagatctacattgacgtacttatcctt
aaggctgctggtggcgtctatgaagcatctatgcttggaatcgaatcttgccttcaaaat
atcactttcccggctttaattgttactccaggagagagcgcaaatgaattacattttgat
atcgatgaaagcaagaaggcagaacacctaattaaggtcgaaaaaataccaaaactttat
acattcgctgcatatcaagataagctaattatcgatcctacacctgctgaagttacttca
gtacagtctcttattgtcattggagcttcaaaagatggttcaatgctcggtatgaatcat
ttcggtgaatcaggacttcgtgagtcacttcttggccaaattactgaggttgttaagtct
cttagtgcttaa
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