Trichomonas vaginalis: 4759626
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Entry
4759626 CDS
T01022
Symbol
TVAGG3_0144530
Name
(RefSeq) positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
tva
Trichomonas vaginalis
Pathway
tva03020
RNA polymerase
tva03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
4759626 (TVAGG3_0144530)
09124 Replication and repair
03420 Nucleotide excision repair
4759626 (TVAGG3_0144530)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tva03021
]
4759626 (TVAGG3_0144530)
03019 Messenger RNA biogenesis [BR:
tva03019
]
4759626 (TVAGG3_0144530)
03400 DNA repair and recombination proteins [BR:
tva03400
]
4759626 (TVAGG3_0144530)
Transcription machinery [BR:
tva03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
4759626 (TVAGG3_0144530)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4759626 (TVAGG3_0144530)
DNA repair and recombination proteins [BR:
tva03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
4759626 (TVAGG3_0144530)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHS2_Rpb7-N
Motif
Other DBs
NCBI-GeneID:
4759626
NCBI-ProteinID:
XP_001330423
UniProt:
A2F013
LinkDB
All DBs
Position
IV:complement(21976778..21977396)
Genome browser
AA seq
182 aa
AA seq
DB search
MSNFKWAALTMFFEVELEHQLKLLPIFLSQGTSQTIEKQLKHQKEGQFMLGKGLILKITK
IIEIGKGRVSSRTGCASYSVKFKALVLRPYEDLVIDAKIMILNEFAIMANAGPLTVAVPK
TLLEKDYDFEPETLTYKQKNGGKTLGSKTVIRVKIITAVPHKDQIHISATGNLIDPILGV
IG
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaattttaaatgggcggctttgacaatgtttttcgaggtagaattagagcatcag
cttaaacttctaccaatattcctttcacaaggaacaagccagacaattgaaaagcagttg
aaacatcagaaagaaggccagtttatgcttggcaaaggccttattttgaaaattacaaag
attattgaaattggaaaaggccgcgtttcatcaagaactggctgtgcctcatacagcgtt
aaatttaaagctcttgttctcagaccttacgaagatttagttatcgacgctaaaattatg
atcctcaatgaatttgcgatcatggctaatgcaggaccgttaacggtcgctgttccaaag
accctcctagaaaaggattatgattttgaaccagaaacccttacatacaaacaaaagaat
ggaggaaagactcttggatccaagacagtcatccgtgtaaaaatcatcacagctgttcct
cataaggatcaaatccatatctccgctactggtaatcttattgacccaatccttggtgtc
atcggttaa
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integrated database retrieval system
