KEGG   Trichomonas vaginalis: 4760778
Entry
4760778           CDS       T01022                                 
Symbol
TVAGG3_0569180
Name
(RefSeq) RNA polymerase ii, chain L domain-containing protein
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
tva  Trichomonas vaginalis
Pathway
tva03020  RNA polymerase
tva03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tva00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4760778 (TVAGG3_0569180)
  09124 Replication and repair
   03420 Nucleotide excision repair
    4760778 (TVAGG3_0569180)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tva03021]
    4760778 (TVAGG3_0569180)
   03400 DNA repair and recombination proteins [BR:tva03400]
    4760778 (TVAGG3_0569180)
Transcription machinery [BR:tva03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     4760778 (TVAGG3_0569180)
  RNA polymerase III system
   RNA polymerase III
     4760778 (TVAGG3_0569180)
  RNA polymerase I system
   RNA polymerase I
     4760778 (TVAGG3_0569180)
DNA repair and recombination proteins [BR:tva03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4760778 (TVAGG3_0569180)
SSDB
Motif
Pfam: Zn_ribbon_RPAB4 Zn_ribbon_3 Anti-TRAP zf-C2HC5 HypA Zn_Ribbon_1 Zn_Ribbon_TF Zn_ribbon_8 DUF7129 DUF8512 Zn_ribbon_DUF2089 DUF8106 DUF7130 Zn_ribbon_NUD zf_UBZ Zn_ribbon_CLPX_N Phage_gp86 Zn_ribbon_Top1 Zn_ribbon_SprT Ribosomal_aS21 TRASH_HVO_1752_C Zn_ribbon_DZR_6 PHD_Pygo Zn_ribbon_PF0610 Cas12f1-like_TNB Zn_ribbon_RRN7 DmmA-like_C RUBY_RBDX C1_1 Zn_ribbon_IS1595 Zn_ribbon_19 RNHCP Auto_anti-p27 Sgf11 STEEP1 DUF7117 DciA_cyano_C OapC
Other DBs
NCBI-GeneID: 4760778
NCBI-ProteinID: XP_001315161
UniProt: A2EWQ0
LinkDB
Position
II:<18870321..>18870601
AA seq 47 aa
MVVVEYNCSNCGKTVRAEDRGAMRCPQCGCNILYKKRTTKRITFSAR
NT seq 144 nt   +upstreamnt  +downstreamnt
atggttgttgttgaatacaattgctcaaactgcggcaagactgtcagagctgaagaccgc
ggtgcaatgcgttgcccacagtgcggctgcaacattctctacaagaagagaacaacaaag
cgtatcacattcagtgctagataa

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