Trichomonas vaginalis: 4763377
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Entry
4763377 CDS
T01022
Symbol
TVAGG3_0679830
Name
(RefSeq) RNA secondary structure unwinding
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
tva
Trichomonas vaginalis
Pathway
tva03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4763377 (TVAGG3_0679830)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tva03041
]
4763377 (TVAGG3_0679830)
Enzymes [BR:
tva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4763377 (TVAGG3_0679830)
Spliceosome [BR:
tva03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
4763377 (TVAGG3_0679830)
Complex B
4763377 (TVAGG3_0679830)
Complex C
U2 SnRNP specific factors
4763377 (TVAGG3_0679830)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_22
AAA
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
4763377
NCBI-ProteinID:
XP_001317734
UniProt:
A2EPC6
LinkDB
All DBs
Position
III:complement(<10944565..>10946287)
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AA seq
505 aa
AA seq
DB search
MEKDPLDDFFDGLDANTEAKAGDFSSSDSDDAEKKSKSFITPGEFEDDEGNKNQNDDEEP
EYVLPPDHSKITYPPFKRNTTFEQLKDYYLDKADEEEYKAINEIKVIGCEISPVLSFEPY
IENRPELENFFKDHSINKPTPVQAQVLPIAINGNNLIVVSPTGTGKTLCFLIPLLYHVLA
QGKQEGPTALILSPTELLARQTTLVCHQLIKSTDIKCVELTGNQMKHKQQSSLMKGADVI
IGTPGRLMNFLKTVNWQFCTYVVVDEADRIFETGFLRQLRSIMDYIRPDRQTLLFGATLP
PQIEELSMNSLKFSTRVQIGKTGAPQSNIEHNFVIFDDPAKKREWIKENLLKLPDGLVLL
FVKDKNFCDTLYGILKKITNLITLVHGNMDANQRTAAFNKFRKGECRFLIATEIAARGVD
IENINCVVNVDIPEQPESYIHRVGRTARAGRSGTAFTLLTPRDIDSASKLLHHFLLTGID
PPESLIEFVENVQNNQQQMKTPFDE
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagatcctcttgatgacttctttgatggactagatgccaacacagaagcaaaa
gcaggtgatttttctagtagtgactcagatgatgccgaaaaaaaatcaaaatctttcatt
acaccaggtgaatttgaagatgatgaaggaaacaaaaatcaaaatgacgatgaagagcca
gaatatgtattaccaccagaccattcaaaaatcacataccctccattcaaaagaaataca
acattcgaacaattaaaagattattatctcgataaagcagacgaagaagaatataaagca
ataaatgagatcaaagtcatcggctgtgaaatatctcctgtattatcattcgaaccttac
attgaaaatcgtccagaattagaaaatttcttcaaagaccactcaattaacaagccaaca
ccagttcaagctcaagttttaccaatagcaataaatggaaacaatttaattgttgtttct
ccaacaggaaccggcaaaactctttgttttttaattccattattgtatcatgtcctcgcg
caagggaaacaagaaggtccaacagcattaatactttctcccaccgaattacttgcacgc
caaactactttagtttgtcatcaattgattaaatcaactgatatcaaatgtgttgagcta
actggcaaccaaatgaagcacaagcagcaatcatcacttatgaaaggtgcagacgtcata
ataggaacaccaggaagactcatgaactttctaaaaaccgtaaattggcaattttgtact
tatgttgttgtagatgaagcagatcgaatctttgagacgggatttcttcgtcaattgcgt
tccatcatggactacataaggccggacagacagacacttctctttggtgcaacgctgcct
cctcaaattgaagaattatcaatgaattcattgaagttttcaacacgagttcaaattgga
aaaacaggagctcctcaatcgaatatcgaacataactttgtgatctttgatgatccggcg
aagaagagagaatggatcaaagagaatctcttaaaacttccagatggtttagttctttta
ttcgtaaaagataaaaatttctgtgatactttatacggaattttgaaaaaaattacgaat
ttgattacattagttcatggaaatatggatgcaaatcaaagaacagcagcctttaacaag
ttcaggaaaggagaatgtcgattcctcattgcaacagaaattgcagcaagaggtgttgac
atagaaaacatcaactgtgttgtgaatgttgatatcccagaacaaccagaaagttacatt
cacagagttggaagaacagctcgagcaggaagaagtggaacagctttcacgctgttgaca
ccaagagatattgattctgcaagtaaattacttcatcacttcttactaacaggaattgac
cctccagaatcattgattgaatttgttgaaaacgttcagaacaatcaacaacagatgaaa
actccattcgacgaataa
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