Trichomonas vaginalis: 4763851
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Entry
4763851 CDS
T01022
Symbol
TVAGG3_0743000
Name
(RefSeq) 5'->3' exoribonuclease family
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tva
Trichomonas vaginalis
Pathway
tva03008
Ribosome biogenesis in eukaryotes
tva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
4763851 (TVAGG3_0743000)
09123 Folding, sorting and degradation
03018 RNA degradation
4763851 (TVAGG3_0743000)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tva03021
]
4763851 (TVAGG3_0743000)
03019 Messenger RNA biogenesis [BR:
tva03019
]
4763851 (TVAGG3_0743000)
03009 Ribosome biogenesis [BR:
tva03009
]
4763851 (TVAGG3_0743000)
03016 Transfer RNA biogenesis [BR:
tva03016
]
4763851 (TVAGG3_0743000)
Transcription machinery [BR:
tva03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
4763851 (TVAGG3_0743000)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
4763851 (TVAGG3_0743000)
Ribosome biogenesis [BR:
tva03009
]
Eukaryotic type
Pre-60S particles
RNases
4763851 (TVAGG3_0743000)
Transfer RNA biogenesis [BR:
tva03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
4763851 (TVAGG3_0743000)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
4763851
NCBI-ProteinID:
XP_001318202
UniProt:
A2EMZ4
LinkDB
All DBs
Position
III:<22263002..>22265530
Genome browser
AA seq
797 aa
AA seq
DB search
MGVPAFFRTLSRKYPLIISNCIEPHETNGHYLPNASLPNPNTIGDREFDCLYLDMNGLIH
PCFHPEGLPPPKSEAEVLQNIENYIERLFMIVRPRQILFMAIDGPAPRAKMNQQRKRRFF
AAKQAAHDRWIKYWKAQKSGETELAAELYNPDYLKNHDSNVITPGTLFFERLSKHLHGFI
QRKQETDPAWGKICVILSDASVPGEGEHKIMDFVRAQRLEPQYDSNRHHVIYGLDADIIF
LGLASHEPYWTILRERINEAKDLPRQNSQQKKATEEDEKMALHHQIFDAPEEKEKVDLIG
PKHFDFVSLWILRQYLERDLKPRNLPPNLPWDLERAIDDFIFICYGCGNDFIPTLPGFSI
AEGTVSDIICLYKNNLPRYNAYLTYNGQVDFPRFKDFMKLICDERRTGEYVFERNSLLHI
LCPEQRSEEIEKQVNKISQAPDPDIDQEPPTEAEEKKEERKTKNIVPHVYEGIKVTEETD
LAQLKRVYYKQKFHAETKEEIAKIVTEFTRGMIWTLNYYLHGTHNWDWSYPYHSAPCSSD
WDLVDVNPATYQFDRGCPFLPLWQLMAVLPPQSAHALPEKMQFLMTNEKSPIKDFYPTTF
SIDLEGAKQAYKGHVLVPFIGEANTDWDKRISDVMKGTDLRLTYEEEQRNQFSPTYIFLD
DEKAPGGKPPITRESPIIPMNYPVVGRLTWTRDVDDHDGTSHAYIFDLKTPDYRRDFSWM
RRDVIPPPYAIEGKMGRADGTDHESFFDRGAIDFESIRAESEMPLQMPGVPQGQDYLYRE
RMIEKIESERRMFGGNR
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcattctttcgtacactttcccgaaaatatccactaatcatttctaac
tgtattgagccacatgaaacaaatggacactacttaccaaacgcttctcttccaaacccc
aatacaattggcgatagagaatttgactgtttatacttggatatgaatggtttaatccat
ccatgttttcatccagaaggtctcccaccgccaaaatctgaagcagaagtattacaaaac
atcgaaaactacatcgaacgtctttttatgattgttcgcccgcgccaaatcttattcatg
gcaattgatggaccagcaccacgtgctaaaatgaaccaacagcgtaagcgtagatttttc
gccgcaaaacaagcagcacacgacagatggatcaaatactggaaagcgcagaagagcgga
gaaacagagttagcagcagaactttacaatccagactatctcaaaaatcacgattcaaac
gtaattactccaggaactctatttttcgaaagattatcaaaacatttacacggattcata
caaagaaagcaagaaactgatcctgcatggggtaaaatctgcgttatactcagtgacgca
tcagttcctggcgaaggagagcataaaattatggatttcgtaagagcacagagattggag
ccacaatacgattcaaacagacaccacgtcatctacggccttgatgctgatatcattttc
cttggattggcatcgcatgaaccatattggacaattctcagagaaagaatcaacgaagca
aaggatcttcctcgccagaactcacaacaaaagaaagctactgaagaagacgagaaaatg
gctttacaccatcagatctttgatgctcctgaagaaaaagaaaaagttgatttaattggt
ccgaagcatttcgacttcgtatcgctttggatccttcgccaatatttagaacgtgacttg
aaaccacgtaatttaccaccaaatttaccatgggacctcgaaagagccattgatgatttt
attttcatttgttacggctgcggcaacgattttatccctacccttcctggattttccatc
gcggagggcacagtttcggatattatttgtttatacaaaaacaatttaccgagatataac
gcatatctcacttacaacggccaagtcgacttcccacgcttcaaggacttcatgaaatta
atttgtgatgaaagaagaacaggagaatatgtctttgagcgcaattctcttttacatatt
ttatgtcctgagcaaagatccgaagaaattgagaaacaagtgaacaaaatatcacaggca
cctgatccggatatagatcaagagcctccaacagaagcagaagaaaagaaagaagaaaga
aaaacgaaaaacattgttccccacgtttacgaaggaattaaagtcacagaagaaacagat
cttgcccaattaaagcgagtttactacaaacagaagttccatgctgaaacaaaagaagaa
attgccaaaattgttacagaattcactcgcggcatgatttggacccttaattattatctc
catggcacacataactgggattggtcctatccataccattccgctccttgttcttccgat
tgggatttggtcgatgtaaatcccgccacttaccagttcgacagaggctgtcctttcctt
cctctatggcaactgatggctgttctgcctccacaatccgctcacgcccttccagaaaaa
atgcaatttcttatgacaaacgaaaagtcaccaattaaggacttttaccctaccacattt
tccatagacctcgaaggagcaaagcaggcctacaaaggccacgttttagttccatttatt
ggagaagcaaacacagactgggacaaaaggatctcggatgtcatgaaaggaacagatctc
cgcctaacttatgaagaggaacagagaaaccagtttagtcccacttacattttcctggat
gatgagaaagctccgggaggaaagcctccgatcaccagggaaagcccaataataccaatg
aactaccctgtagttggtagattgacgtggacaagagacgtagatgaccacgatggaaca
tctcatgcttatatcttcgatctcaagactcctgattaccgaagagacttctcatggatg
agacgtgatgttataccgcctccttacgctattgaaggcaaaatgggaagagcggatgga
acagatcacgaatcattcttcgacagaggagcaattgacttcgaaagtattagagctgag
tcagaaatgcctctccaaatgcctggcgttcctcagggacaggattacttgtatagagaa
agaatgatcgagaaaatcgagtcagaaagaagaatgtttggtggaaaccgttag
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