Trichomonas vaginalis: 4767421
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Entry
4767421 CDS
T01022
Symbol
TVAGG3_0564060
Name
(RefSeq) 5'->3' exoribonuclease family
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tva
Trichomonas vaginalis
Pathway
tva03008
Ribosome biogenesis in eukaryotes
tva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
4767421 (TVAGG3_0564060)
09123 Folding, sorting and degradation
03018 RNA degradation
4767421 (TVAGG3_0564060)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tva03021
]
4767421 (TVAGG3_0564060)
03019 Messenger RNA biogenesis [BR:
tva03019
]
4767421 (TVAGG3_0564060)
03009 Ribosome biogenesis [BR:
tva03009
]
4767421 (TVAGG3_0564060)
03016 Transfer RNA biogenesis [BR:
tva03016
]
4767421 (TVAGG3_0564060)
Transcription machinery [BR:
tva03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
4767421 (TVAGG3_0564060)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
4767421 (TVAGG3_0564060)
Ribosome biogenesis [BR:
tva03009
]
Eukaryotic type
Pre-60S particles
RNases
4767421 (TVAGG3_0564060)
Transfer RNA biogenesis [BR:
tva03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
4767421 (TVAGG3_0564060)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
4767421
NCBI-ProteinID:
XP_001321722
UniProt:
A2ECV4
LinkDB
All DBs
Position
II:complement(<17938931..>17941039)
Genome browser
AA seq
702 aa
AA seq
DB search
MGVPSFFRWLKGHYPLLLSQCIETELDEDPSQPNPNTEGDVEFDNLYLDMNGLIHPCYHP
KNQEHPKTYLEVFQNVEKYVDRIFNLVRPRKVLFMAVDGVAPRAKMNQQRIRRFCAAKDS
EYNRYMQCQDLSITKEEIDEIMDPQTIIQSDTNTITPGTEFMMQLSDYITEMINRKQKTS
PAWSNIAVIFSDASVPGEGEHKIMEFIRSQRVEFNYDFSRHHCVYGLDADFLFLGLSCHE
LFFTILREEVFNVENLTPPAGRFGPAKFLFANGFVFRQYLERDLKPAKMGFDWYFERALD
DIIFLCVTAGNDFLPQIPGMNILGGSIGKIFELYKKILPELGGYITDNGNVDCKRAAKFL
HSLVDSEEIALQGIMNPSNLSKEASINTNKIYQNDYSQIEKVPRPISSEITLEKPDDAFE
NLQQRYYKEKHGFDEKDVEKVKDVCINYLKGMAWTLQYYLHGCTSWSWYYPYYYAPLLSS
FELLENLDINLSVLDDSKPIPPLEQLMSVLPPQSSHLLPQNMAELMKKGSPLEKYYPTTF
SIDMMGGHQPWKGITFIPIIDGEFLEKTLKDSKIILTDEEEKRNKTGFVKVFVQNKDEGL
CDGSLIWGELKKTEIENCFHFIFENPPREKNLSYIPLNIDLPRNIVGGVCVGPSKPEDMP
LSIPGIPYNCKRDFRITKIIQEKTRKSTLSVNKKKKNLSHLI
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccctcatttttcagatggctgaagggacattacccacttttactcagccaa
tgcattgaaacagagttagacgaagacccatctcaaccaaacccaaatactgaaggagat
gtcgaatttgataatttgtatttggatatgaatggtttgattcatccatgctatcatcca
aagaatcaagaacatccaaaaacatatcttgaagtattccaaaatgtagaaaaatacgtt
gacagaatttttaatttagttcgccctcgaaaggttttatttatggcagttgatggtgtt
gctccaagagctaagatgaatcagcaaagaatacgaagattttgcgcagcaaaagactca
gaatataatcgttatatgcaatgtcaagatttatcaattacaaaagaagaaattgatgaa
ataatggatcctcagactattatacaatcagatacaaacacaattacaccaggaaccgaa
tttatgatgcaattatcagattatattacagaaatgattaatcgcaagcagaaaacatca
ccagcatggtcaaatatagcagttatattctcagatgcatcagttcctggcgaaggagaa
cacaaaattatggaattcattcgaagtcaaagagttgagtttaattatgacttttcgcgt
catcactgcgtctatggtcttgatgccgacttccttttcctcggtttatcatgtcacgaa
ttattctttacaatattaagggaagaagtcttcaatgtagagaatctaacacctcctgcc
ggaagatttggtcctgccaaatttttatttgcgaatggttttgtttttcgtcagtatctc
gaacgagatttgaaaccagccaaaatgggctttgattggtacttcgaacgtgcactagat
gatattatattcctttgcgtaacagcaggtaacgatttcttacctcaaatcccaggaatg
aacattcttggcggttccatcggaaaaattttcgaattgtacaagaaaattttgccagaa
ttaggtggatatatcactgataatgggaatgttgactgcaaaagagctgctaagttcctt
cattctcttgttgacagtgaagaaatcgcacttcaaggtattatgaacccttctaattta
tcaaaagaagcttcaataaataccaacaaaatttaccaaaacgattattcgcaaattgaa
aaagtgccacgaccaatttcctcagaaatcactcttgaaaaaccggatgatgcttttgag
aatttgcaacagagatattataaagagaagcatggtttcgatgaaaaagatgttgaaaaa
gtaaaagatgtttgcataaattatctcaaaggaatggcatggacattacagtactatttg
catggatgtacatcatggagctggtattatccttattattatgctcctttgttgtcttct
ttcgagttactggaaaatttagatataaatttgtcagttttggacgattccaagccaata
ccaccgttagaacaacttatgtctgttcttccgccacaaagtagtcatcttctccctcaa
aatatggcagaattgatgaaaaaaggttctcctctggaaaaatattatccaacaacgttt
tctattgacatgatgggcggacatcagccatggaaaggaataacattcattcctatcatt
gatggtgagtttctcgagaaaactttgaaagattcaaaaattattttaactgatgaagaa
gaaaaaaggaacaaaacaggatttgttaaagtctttgttcaaaataaggacgaaggtctc
tgtgatggttctttaatttggggagaactcaagaaaactgaaattgaaaattgttttcat
ttcatattcgaaaatccacctcgtgaaaagaatttatcgtatattccattgaatattgat
cttcctcgtaatattgttggaggcgtctgtgttggaccttcgaaacctgaagacatgcca
ttgtcaattccaggaattccgtataactgcaagagagatttcagaattactaaaattatc
caagaaaaaacacgaaagtcaacactttctgttaataagaaaaagaaaaatttatctcat
ctgatttaa
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