Trichomonas vaginalis: 4768780
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Entry
4768780 CDS
T01022
Symbol
TVAGG3_0542410
Name
(RefSeq) pre-mRNA splicing factor family
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tva
Trichomonas vaginalis
Pathway
tva03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4768780 (TVAGG3_0542410)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tva03019
]
4768780 (TVAGG3_0542410)
03041 Spliceosome [BR:
tva03041
]
4768780 (TVAGG3_0542410)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
4768780 (TVAGG3_0542410)
Spliceosome [BR:
tva03041
]
Complex B
Other components
Prp19-related factors
4768780 (TVAGG3_0542410)
Complex C
4768780 (TVAGG3_0542410)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
Motif
Other DBs
NCBI-GeneID:
4768780
NCBI-ProteinID:
XP_001323066
UniProt:
A2E949
LinkDB
All DBs
Position
II:complement(14125801..14128210)
Genome browser
AA seq
798 aa
AA seq
DB search
MNPFSIFQTVDHVLNNISARKTDLLLYSDPQSPVTISDENKISSANELWAMYEEHLGPNG
RFCRSYKLWLNYTDTRSAYILDQLKDNEEQLIAANKSFEQALLNLYLCPRIWINYLDFLG
RQKKVTLLRKTFNRALQSLPITQHDKIWTEFLPIIKEIKCIPTVFDSYKRILKLHPEYIE
EAASYFITNKAYKEAAFFLKIILDNPNFKSVKERPKYFYWSKMSDIIAEDPTIEDSENLL
KNGCDDFVVETGRVWTSIADHYSRLGLFADVLQIYEDALTQTRTAHDFSVVYTSATEFMK
QVIIKSPEWRELFMTKLNDLIDRHPILLNATILKAEPNNILAWINKAPLYQDLPYFYEPT
KYNEIWDQINDIFDEDTKNEMFVLIEAIETVKPKFAFAGNVSDLWIALAKLSTNPKMVFD
IILFDHENKENEKPALTNEDCVRIYLFYCEYLIEEGKYENALDVARRSIDNRKISSTLGM
SRLWSLALDLEWSLSGSSSVRALFERCMNSPAVTQRHIICYANFLKSIDHIDDMFRVYER
GIAATGWPASAPIWLRYLDSFVMTYKGEKRERTRDLFEDALKGEKCEFSIHIYLLYADYE
ENYGLFSHAMSIYKRATEQLNDSRVYHVWISAAMRIFGAIKARQVYDYAVNTLSGQEAAD
WCVRYAAMESKLKEFERARKIFIHGSQFADPAKCHDFWESYEKFETEHGTKDTFAEMLSQ
KNIAAQKFNSEIHMGMVNEEMDTAALDDEKELDVVENARKLAVLEQRIPKTIYEGGLNQV
STISQLFSSKKTKKKLEL
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctttttctatttttcagacagtagatcatgttttaaataatatatctgctagg
aaaactgatttactgttatatagtgatccacaaagccctgttactatatcagatgaaaac
aaaatttcctcagctaatgaattatgggcaatgtatgaagagcatttaggcccaaatggt
agattttgtcgttcttacaagttgtggctaaactataccgatactcgctctgcatatatt
ttagatcaattaaaagataacgaagaacaactgattgcagcgaataaatcattcgagcag
gcattacttaatttgtatttatgcccaagaatatggattaactatttagattttcttgga
cgacaaaaaaaggtaactttattaagaaaaacatttaacagagcacttcaatcattgcct
attacccaacacgataaaatttggactgaatttttaccaattattaaagaaatcaagtgt
attccaacagttttcgattcatacaagcgtatacttaaactacatcctgaatatatcgaa
gaagctgcaagttactttattacaaacaaagcatataaagaagcagcatttttcttgaaa
ataattttagacaatcctaactttaagtcagtaaaagaaagaccgaaatacttctattgg
tcaaagatgtccgatatcattgctgaagaccctacaatcgaagattcagaaaatttactt
aagaacggctgcgacgactttgttgttgagactggaagagtctggacatcaattgctgat
cattactctcgactcggcttatttgctgacgttttacaaatttatgaagacgctttaacg
caaacaaggacagctcatgacttttcagttgtttacacgagtgcaacagagtttatgaag
caggttatcatcaaatctcctgaatggcgtgaattattcatgacaaaattaaatgatctt
attgatagacatccaatcttattaaatgcgaccattcttaaggcagaacctaataatata
ttagcatggatcaataaagcgcctttataccaagatttgccttacttttacgaaccaaca
aaatataatgaaatttgggatcaaattaatgacatttttgacgaagatactaagaatgaa
atgtttgtacttatagaagccatcgaaactgtaaagccaaagttcgcatttgccggaaat
gtatctgatttatggattgctttggccaaactatcaacaaaccctaaaatggtattcgac
attattcttttcgaccacgaaaacaaagaaaatgaaaaaccagctttaactaacgaagat
tgtgtcagaatctacttgttttactgcgaatacctaattgaagaaggcaaatatgaaaat
gccttagatgtggcccgccgttccatcgataaccgaaagatttcttcaacattaggaatg
agtcgtctttggtcgctggctttggacttggaatggtctctcagtggttcatcatccgtc
agagctttattcgagcgctgtatgaactctcctgccgttactcaacgccatattatctgt
tatgcgaactttttgaagtccattgaccatatcgatgacatgtttcgtgtctacgagcgt
ggtatagccgcaacaggatggccggcaagcgctccaatttggttaagatatcttgatagt
tttgtcatgacttataaaggcgaaaagagggaacgaacacgtgatttatttgaagatgca
ctgaaaggagagaaatgcgagttctctattcacatttatttgttgtatgcagattatgaa
gaaaattacggtttgttttcacacgcaatgtcaatatacaagcgtgccacagaacaacta
aatgatagcagagtttatcatgtatggatcagcgctgcaatgaggatttttggtgcaatt
aaagctagacaagtttacgattacgctgtaaacacattatctggtcaggaagcagcagat
tggtgcgtaagatatgcagctatggagtcaaaactcaaagaattcgaaagagccagaaag
attttcattcacggcagccaattcgctgatcctgctaaatgccatgacttctgggagagc
tacgagaagtttgagaccgaacacggcacgaaagacacatttgctgagatgctttctcag
aagaacatcgcagctcagaaattcaactccgaaatccacatgggaatggtcaacgaggaa
atggacaccgcggcgttggatgacgagaaagaacttgatgtcgttgagaacgcaaggaag
ctggcagtccttgagcagaggattcccaaaacaatttatgaaggtggcctcaaccaagtc
agtacaattagtcagcttttctcttcaaagaagacaaaaaagaaacttgaattgtaa
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