Trichomonas vaginalis: 4770881
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Entry
4770881 CDS
T01022
Symbol
TVAGG3_1017600
Name
(RefSeq) helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tva
Trichomonas vaginalis
Pathway
tva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4770881 (TVAGG3_1017600)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tva03019
]
4770881 (TVAGG3_1017600)
03041 Spliceosome [BR:
tva03041
]
4770881 (TVAGG3_1017600)
03009 Ribosome biogenesis [BR:
tva03009
]
4770881 (TVAGG3_1017600)
03016 Transfer RNA biogenesis [BR:
tva03016
]
4770881 (TVAGG3_1017600)
Enzymes [BR:
tva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
4770881 (TVAGG3_1017600)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
4770881 (TVAGG3_1017600)
Spliceosome [BR:
tva03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
4770881 (TVAGG3_1017600)
Complex C
U4/U6.U5 tri-SnRNP related factors
4770881 (TVAGG3_1017600)
Ribosome biogenesis [BR:
tva03009
]
Eukaryotic type
Pre-60S particles
Helicases
4770881 (TVAGG3_1017600)
Transfer RNA biogenesis [BR:
tva03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
4770881 (TVAGG3_1017600)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
DUF7809
Motif
Other DBs
NCBI-GeneID:
4770881
NCBI-ProteinID:
XP_001325133
UniProt:
A2E3A0
LinkDB
All DBs
Position
I:20141682..20144620
Genome browser
AA seq
797 aa
AA seq
DB search
MAIYTAPVKSLANQKYSEICEKFPSVGLITGDVSTNPTADVIIMTAEVLRNHLMSNSSLL
SRAKHIILDEAHYLGDPQRGYVWEEIIISFQKQMRFVLLSATLPNGNELSQWLSNTTNVE
THTITQYHRPVPLRINAVSESHDIDAIKEGDNPPNMLLISEICKQNGILGAPSTKYILPK
DPPFYTIASYANDVVKLGYTPLIVFCLSRFRCVQVSKQISGRQSNQALDIFEAASQDWDA
SIKSSDQYALVHDLIQKGVGIHHSGIIPILRETVELLFSKGLLVVLVATETFALGVNSPA
RAVMLSSLVKWGGTSFRSISSSEFSQMAGRAGRRGFDTHGDVFIYLTTGTSPEFVSSVIE
KKSEVLKSQMRVTSSLVLSCVSCNVDPFAFLKRSFLRYQRNLRLMELKSKNLPEITENEK
NIYDYEVLLNQIAQIVLHPKNSRKVLVPGRLVFIVSNGVCWGWSSIVNLDSRGKDVEVIV
SAVKDKNGQYVPSSKVEVACLLDVTFPIETIKMISSLTIQNPKTDIGMARASSLLGILDR
VYKSYNNQVPLISSNLVTFGKEKLTKLCKDSEEIKKKLTKEELKTIYTGESAAEVVINIK
AEITTLENPQEENQIEKIKKSLINLGFINNDNLLELKGRVARLIKLEDPVCLTELLFSAF
FFGMQPNMICVVTSCFVESPPKFKCSMTPLTTETWNNLKKSLKKIEDIGLFTMPHKKLMG
FAHTFISNGSITSAVKETAGISEGMAVRIAKRMHEIIHMLVEAAKLIGTPELVEAFDGAM
EVITNITKLDASLYKLD
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggctatctatacagcgccagtcaaatcactcgcaaaccaaaaatactccgaaatttgt
gaaaaatttccaagtgtcggtttaattacaggagatgtatctacaaatccaacagcagat
gtaattatcatgacagcagaagtacttaggaatcatttaatgtcaaattcatcattacta
tctcgtgcaaaacatataattttggatgaagctcattatcttggcgatccgcaacgtgga
tatgtttgggaagagataattatatcatttcagaagcaaatgagatttgttctccttagt
gctacacttccaaacggaaatgagctttctcagtggctttcaaacacaacaaacgtcgaa
acgcatacaattacgcaataccacagaccagttccattacgaattaacgctgtttccgaa
tctcacgatatagacgcaattaaagaaggagacaaccctccaaacatgctcttaatatcc
gaaatatgcaaacagaatggaattttaggtgctccttccacaaaatacatacttccaaaa
gatccacctttttatacaattgcttcatatgcaaatgacgttgttaagcttggatataca
ccgctaattgttttttgcctatccagattccgctgtgtccaagtttcaaagcaaatttct
ggaagacaatcaaatcaagcgttagacatcttcgaagcggcctcacaagactgggacgcc
tccattaaatcgagtgaccaatacgctctcgtacatgatcttatccagaaaggagttgga
atccatcattccggaattatcccgattttgagagaaaccgtcgaacttttgttctcaaaa
ggattattagtggtcttagttgccactgagacatttgcactgggtgtcaactctccagca
cgtgctgttatgctttcttcgcttgttaagtggggaggaacaagttttaggtcaatttct
tcatctgaattttcacaaatggcaggaagagctggaagaagaggttttgatactcatgga
gatgttttcatatatctgaccactggaacttcccctgaattcgttagttctgtaattgaa
aagaaatctgaggtcttaaaatcgcaaatgagagttacatcatcactagtcttgagctgt
gtatcatgtaatgttgatccgtttgcttttcttaagagaagttttttgagatatcagaga
aatttaagattaatggaattaaagagcaaaaatcttccagaaatcactgaaaatgagaag
aacatatatgattatgaggtattattgaatcaaattgctcaaattgttcttcatccgaaa
aattccagaaaggttttagttccaggacgcttagttttcattgtttccaacggcgtttgc
tggggatggtcgagcattgtcaatttagactcaagaggcaaagatgttgaagttattgtt
tccgcagttaaagataagaacggacaatacgttccttcatcgaaagtggaagtcgcatgc
ttacttgatgtcacattcccaatcgaaaccatcaaaatgatctcttctttgacaatccaa
aatccgaagacagatatcggaatggccagagcctcatccttgcttggaatactcgacaga
gtctataaatcatataataaccaagttcctttgatcagttctaacttagttacctttgga
aaagagaaattaacaaaattatgcaaagattcagaagaaattaagaagaaactgacgaaa
gaagagctcaaaaccatttatacaggtgagtcagcagcagaagtcgttataaacatcaaa
gcggagataacaacactagaaaatccgcaagaagaaaaccaaattgagaaaattaaaaaa
tctcttatcaatttaggtttcattaataacgacaatcttcttgaattaaagggaagagtt
gcaagactcatcaaacttgaagatcctgtgtgtttaactgagttattattcagcgcattc
tttttcggaatgcagccaaacatgatatgtgttgttacatcatgtttcgttgaatctcct
ccgaagttcaagtgttcaatgactcctttgacaacagaaacatggaataatttgaagaaa
tcactaaaaaagatcgaagacattggtttgttcactatgccacataagaaactcatggga
ttcgctcacacattcatttctaatggatcaataacaagcgctgttaaggaaacagctgga
attagtgaaggaatggctgtgagaattgcaaaaagaatgcatgagataattcacatgttg
gttgaggctgcaaaactgattggaacacctgagcttgttgaggctttcgatggagcaatg
gaagtgattacaaatatcacaaaacttgatgcttccctttataagttagattag
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