Trichomonas vaginalis: 5465454
Help
Entry
5465454 CDS
T01022
Symbol
TVAGG3_0711610
Name
(RefSeq) DNA repair/RNA processing CPSF family
KO
K10610
DNA damage-binding protein 1
Organism
tva
Trichomonas vaginalis
Pathway
tva03420
Nucleotide excision repair
tva04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
5465454 (TVAGG3_0711610)
09124 Replication and repair
03420 Nucleotide excision repair
5465454 (TVAGG3_0711610)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tva04121
]
5465454 (TVAGG3_0711610)
03400 DNA repair and recombination proteins [BR:
tva03400
]
5465454 (TVAGG3_0711610)
Ubiquitin system [BR:
tva04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
5465454 (TVAGG3_0711610)
DNA repair and recombination proteins [BR:
tva03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
5465454 (TVAGG3_0711610)
TCR (transcription coupled repair) factors
Cul4-CSA complex
5465454 (TVAGG3_0711610)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
5465454
NCBI-ProteinID:
XP_001580910
UniProt:
A2DIC8
LinkDB
All DBs
Position
III:complement(16161367..16164549)
Genome browser
AA seq
928 aa
AA seq
DB search
MVLYGDISNIIEIYDNGKNKSNLLVIRSDGRYSVISYQRDFVTLQTGSIIGTQGVPCDSP
YKIYKSGYQLVIQVTSTAIQYYEITPSCFLSSPIPLAIPCVKLIDFVVVNINSSTTKVAV
LFEDTKMQRYVNIYVLDRKINRFDEVESNTTENDAYRLIAISAQNIVVVTTDKMIRMKVS
SPDTESSTIYTSHSLKRISMLSENTAVAVDEGCNVYYLSLSPSGKQSLTRVCSVNRPLVL
SVLDETTVFSFSKSGPSHVIHLVNSNKPYAVAEEILFSQESSRILLQMDTKRGDFVSFAP
DGTLSIIRKTVGVRTEAEVEIHGIQKSWLLDQQTAVISFIDRTRALKYTGGEISIANVKG
LITDESTLAFSRSNGGYVQVTQNGISFNGKITKCVHKNICAFASSEITAVCNIQGTIVLY
HSDSGKKYHTHQLNSVPNIIAANNNFISVVFWPSSTLMRIPIEKPNDVLVIPDIKAVDIS
CYDGAFFAIDNSESIIVLKDEKSDKEELHCEGLHTTLSVVDNNSIFISGEYPTIVKDNYL
FSLDCAAKVSVDAIDNTILFCDNEKLSCGTLYSPRFKVSPRKTMSHVYNASQLPNGQFLL
VYEHEGSHYATLAASPLDTPDQNNQGSIQLNGPCNYIVGITQKDRNIVCLAVNQTIVLCE
IVDGQLEHRSIQKLESKPLRLLEFQGYLLVLKQEAVDLFNIICSSLTDVKLQQRISHFTL
GNSTSVCVMDDYMAIGDALESVVLYKFNSKKEPPLFEEIGRNCDILSITALSFFGDTENE
LIASDNRGAIFSLAFSGTKNYISQEIYIKRSFSIGTNVTSLVPDVLGNYLYTTSESGKHY
ILAKIQNDEMFGVLDQISRKFIRSTGNLNPYMSSKVVRNGIVLPQGFIDLEVVEEISNLS
DEELSKISSEINPKELHDFANGVLNQMI
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggtgttatatggagacatttctaacatcatcgaaatatatgacaacgggaaaaacaaa
tctaatctattagttatccgttcagacggtcgttacagcgttattagttatcaacgtgat
ttcgtcacacttcaaacgggaagtattatcggaacacaaggagttccatgtgactcacca
tataaaatttataaaagtggttatcagctcgttattcaagttacttcaacagcaattcaa
tattatgaaattacaccaagctgtttcttatcttctcctattccattagccattccatgt
gtcaaattaatcgatttcgttgttgtaaatattaattcttctacaacaaaagtcgcagtt
ttatttgaagatacaaagatgcaaaggtatgtcaatatatacgttcttgatcgtaagatt
aacagattcgacgaagttgaatcgaatacaacagaaaatgacgcttatcgattaattgcg
atttcagctcagaacattgttgttgttactacagacaaaatgatcaggatgaaggtttct
tcacctgatacagagtcatctacaatatatacttctcattctcttaaaagaatttcgatg
ttatcagaaaatacggctgttgcagttgatgaaggctgcaatgtatactacttaagctta
tcaccttcaggtaagcaatctctcacgcgtgtttgcagcgtaaacagacctttagttctc
tcagttttagatgaaacaacagttttctcattttcaaagtcaggaccatcgcacgttata
catttggtaaattcaaacaaaccgtacgccgtggccgaagaaattttgttttctcaagaa
tcttcaagaattttgctccaaatggacacgaaacgcggtgatttcgttagtttcgcaccg
gatggaactctatcaatcataaggaagactgtaggtgttagaactgaagcagaagtcgaa
attcacggaattcagaaatcttggcttctcgatcagcaaacagcggtcatatccttcata
gaccgcacacgtgcgttaaagtatacaggaggagagatttctatcgcaaatgtcaaagga
ttaataacagatgaatcaactttagctttttcaaggtcaaatggcggctacgttcaagtt
acacagaatggtattagttttaatggtaaaataactaaatgtgtccataaaaacatctgc
gcatttgcatcttctgaaattacagcagtttgcaacatccaaggcacaattgtcctttac
cattcggatagcggtaagaaatatcatacgcaccagctgaattcagtaccaaatattatt
gccgcaaataataattttatttctgttgtattttggccaagttctacactaatgagaatc
ccaattgagaaacctaatgatgtattagtaattcctgatatcaaagctgtcgatatttct
tgctacgacggtgctttcttcgctatagataactccgaaagcataatcgttctcaaagat
gaaaaaagtgacaaagaggaacttcactgcgaaggtttacatacaactttgagtgtggtc
gataacaattcaatatttattagtggtgaatatccaacaatagttaaagataattattta
tttagcttggattgtgctgcaaaagtgtctgtcgatgcaattgacaacacaatcttgttt
tgcgataacgaaaaattgtcctgtggtacattatatagcccaagattcaaggtatcacca
agaaaaaccatgtctcacgtttacaatgcaagtcaattaccaaatggacaatttttgttg
gtttatgaacacgaaggcagccattatgcaacactggcagcatctccattagacacacct
gatcaaaataaccaaggaagtatccaattgaacggaccatgcaattacatcgtcggaatt
acccagaaagaccgaaatatcgtatgtttagctgtcaatcagacgattgttctctgtgaa
atcgttgatggccagctagaacatcgatcaatccaaaaattagagtcaaaaccacttaga
ttgcttgaattccaaggctatttgttggttttgaagcaagaagcagttgatttgttcaat
attatctgcagttcattgacagatgttaagttacaacaaagaatttctcatttcactctt
ggaaattcgacatctgtctgtgtaatggatgattacatggcaataggcgatgcccttgag
tctgttgtcctctacaagtttaattccaagaaggaacctccactttttgaagaaattggc
cgaaattgcgacattttgtcgatcacagctctttcattcttcggagacacagagaatgaa
ctgatagcaagtgataacagaggcgcaattttctctctcgcgttctcaggaacgaaaaac
tacatttcccaagaaatttacatcaaaagaagtttctctattggaacaaacgttacttct
cttgttcctgatgtacttgggaactatctgtacacaacatctgagtcaggaaagcattac
atccttgcaaagatacaaaatgatgaaatgtttggtgttttggatcaaatttcaaggaaa
tttatcagatctactggaaatttgaacccgtacatgtcatctaaagttgtaaggaatgga
attgttcttccccagggattcattgacttggaagttgttgaagaaatctctaatttgtct
gatgaagaattatctaagatttcttccgaaattaatccaaaagagttacatgatttcgct
aatggtgtactcaaccagatgatatga
DBGET
integrated database retrieval system
