Trichomonas vaginalis: 5465949
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Entry
5465949 CDS
T01022
Symbol
TVAGG3_0997880
Name
(RefSeq) exosomal core protein CSL4 family
KO
K07573
exosome complex component CSL4
Organism
tva
Trichomonas vaginalis
Pathway
tva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
5465949 (TVAGG3_0997880)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tva03019
]
5465949 (TVAGG3_0997880)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
5465949 (TVAGG3_0997880)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
5465949 (TVAGG3_0997880)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
TRAM
Motif
Other DBs
NCBI-GeneID:
5465949
NCBI-ProteinID:
XP_001581398
UniProt:
A2DGM5
LinkDB
All DBs
Position
I:complement(16689903..16690516)
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AA seq
146 aa
AA seq
DB search
MTILLPGDTLPLNSKRDESFMVKKDGSKFTTVWGKMDNDEFIPIRGAIVPKIDDIVIARV
IRAKRKELHLVLLSCNDEPLQSPLLAELRSVDIQEHDVDNVIASDFAKPGDLVKAQVVAL
GRSGFYAQLSTAKDGLGVVKIEEVQE
NT seq
441 nt
NT seq
+upstream
nt +downstream
nt
atgactattttgttaccaggtgatacccttcctttaaactcaaagcgtgatgaaagcttt
atggtaaagaaggatggctccaaatttaccactgtttggggaaaaatggataacgacgaa
tttattcccattcgtggagcaattgttccaaagatcgacgatattgttattgctcgtgtt
attagagctaagagaaaagaattacacttagttttgctctcgtgtaacgacgagccttta
caatctccattattggctgagttaagatcagtcgatatacaagaacatgatgtagataat
gttatcgcatctgattttgctaagcctggagatttagttaaagcccaagttgttgcactt
ggtagatcaggcttctatgctcagctttctacagcaaaagatggactcggagttgttaaa
attgaggaagttcaggaataa
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