Trichomonas vaginalis: 5466746
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Entry
5466746 CDS
T01022
Symbol
TVAGG3_0576870
Name
(RefSeq) RNA helicase family
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tva
Trichomonas vaginalis
Pathway
tva03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
5466746 (TVAGG3_0576870)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tva03041
]
5466746 (TVAGG3_0576870)
Enzymes [BR:
tva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
5466746 (TVAGG3_0576870)
Spliceosome [BR:
tva03041
]
Complex A
U2 snRNP components
U2 related factors
5466746 (TVAGG3_0576870)
Complex B
5466746 (TVAGG3_0576870)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Bmp
Motif
Other DBs
NCBI-GeneID:
5466746
NCBI-ProteinID:
XP_001582184
UniProt:
A2DES1
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All DBs
Position
II:<20130212..>20132218
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AA seq
640 aa
AA seq
DB search
MDPLDAFFDNLNEEAPNTAKATGVVDEDELLLEKEEIEKTPVEKLESKIEIKQEEQRLPI
RKNIYIPSSEISSKSQTDIEDLRKRLGNIVVHGLNVLCPIVNWTDCGLPAPLMSHLRLRG
FKQPTSIQCQAIPCILSGRDIIGCAVTGSGKTLAFIIPCLLHVLAQPPTGQYEAAAVILS
PTRELAYQTHIECQKIFSLMDKKSACLVGGNDIENQLRAIKNGSNVIIATPGRFIDLLSS
SAFNIKKVSYLVIDEADRMFDLGFEPQVIRIAERMRKDRQTLMFSATFPHTVERIARKLL
QNSIEIVVGLRNVVTPNINQSILVTNEDNKFNSLLKILGDYTTQGQALVFTNTQDRAEDL
FGKLNKSGYSVGLLHGSMDSPDRNSILHDFREGRFSVLVLTSVGARGIDIASIICVINYD
APDHEADYVHRVGRTGRAGKKGYAFTFVTDKDKTAAAGIKNAMKKSGCEIPKDLEDLCQG
VKAPGLNGFWRGSGFKFDKEEAKSLLALRKAQNDDPLQQKEEEDQCEEEAKEIIEDKSVL
KVNDNLYIGEANINDYTKKARASVSSADNLNSVMDETGTMIIQKGVFCPPGVKPLAGERR
LYLRIEGTTKFAVQAALNRIEEMANAADPIKSKLKTKFQL
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggatccattagatgcgttctttgataatttaaatgaagaagctccaaatacagcaaaa
gcaactggagtagttgatgaggatgaattattattagaaaaggaagaaatcgagaaaact
cctgttgaaaaacttgaatcaaagattgaaattaaacaagaagagcaaagattaccaatt
agaaagaatatttatattccatcaagcgaaatatcgtctaaaagtcaaacagatattgaa
gatttacgtaaaagacttggcaatattgttgttcacggattaaatgtactatgcccgata
gtaaattggacagattgcggtttacctgcaccattgatgtctcatttaagacttagaggt
ttcaaacaaccaacttcaattcaatgtcaagcaataccttgtattttatcaggcagagat
attattggatgcgctgttacaggttctggtaagacacttgctttcattataccatgctta
ctgcatgttctcgctcagcctccaacaggacaatatgaagcagctgcagttatattatct
ccaaccagagaacttgcctatcaaacacatattgaatgccaaaagatattctctcttatg
gataagaaatctgcttgtttagtcggtggaaatgatatcgaaaaccaattacgtgcaatt
aagaatggatcgaatgtaattattgctacacctggtagatttattgatttactttctagt
agcgcattcaatattaaaaaagtaagttatttagttatagatgaagcagatagaatgttt
gatcttggatttgagcctcaagttataaggattgcagaaagaatgcgcaaagatcgtcaa
acattgatgttttctgcaacatttccgcatacagtggaaagaattgcaagaaaactactc
caaaactcgatagaaattgtcgttggacttagaaatgttgttacaccaaatattaatcag
tcaattttggtcacaaatgaagataataaatttaattctttattaaagatcttgggagat
tatactacccaaggtcaagcattagttttcacaaatacccaggatagagccgaagatttg
ttcggaaaactcaataaaagtggttattcagttggattgcttcacggatcaatggattca
ccagataggaactcgattctccatgactttagagaaggaagattttctgtccttgttttg
acttctgttggagctcgaggaattgatatagcttcaattatttgcgtaatcaactacgat
gcaccagatcatgaagctgactatgtacacagagtaggtagaacaggaagagccggaaag
aaaggctacgcgttcacttttgtcactgataaagataaaacagcagctgctggcatcaaa
aacgcgatgaagaaaagtggatgtgaaattcctaaagacttagaagacttgtgtcaaggt
gttaaagctcctggccttaatggtttttggcgaggaagtggattcaaattcgacaaagaa
gaagcaaaaagtttacttgcattgagaaaagcacaaaatgatgatccacttcaacaaaag
gaagaagaagatcaatgtgaagaagaagcaaaagaaatcattgaagacaaaagtgttctt
aaggtcaatgacaatctatacatcggggaagctaatatcaatgattacactaagaaagca
agagcgagtgtttcttctgcggacaatttaaattctgtaatggatgaaacaggaacaatg
atcatccaaaaaggagttttctgtccaccaggagtgaaaccacttgctggagaaagacgt
ttgtatttgagaatagaaggaactacaaagtttgctgtacaagctgcattgaatagaatc
gaagaaatggcaaatgctgcagatccaatcaaatctaaactcaaaacaaagttccaatta
taa
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