Trichomonas vaginalis: 5467108
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Entry
5467108 CDS
T01022
Symbol
TVAGG3_0987780
Name
(RefSeq) DNA repair/RNA processing CPSF family
KO
K12830
splicing factor 3B subunit 3
Organism
tva
Trichomonas vaginalis
Pathway
tva03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
5467108 (TVAGG3_0987780)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tva03021
]
5467108 (TVAGG3_0987780)
03041 Spliceosome [BR:
tva03041
]
5467108 (TVAGG3_0987780)
03036 Chromosome and associated proteins [BR:
tva03036
]
5467108 (TVAGG3_0987780)
Transcription machinery [BR:
tva03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
5467108 (TVAGG3_0987780)
Spliceosome [BR:
tva03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
5467108 (TVAGG3_0987780)
Complex B
5467108 (TVAGG3_0987780)
Complex C
U2 SnRNP specific factors
5467108 (TVAGG3_0987780)
Chromosome and associated proteins [BR:
tva03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
5467108 (TVAGG3_0987780)
TFTC complex
5467108 (TVAGG3_0987780)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
5467108
NCBI-ProteinID:
XP_001582526
UniProt:
A2DD61
LinkDB
All DBs
Position
I:14798877..14802362
Genome browser
AA seq
1142 aa
AA seq
DB search
MIRLYHSVIQPPQHVKCCTVGKFTGTSNPDYDEIAVSLGTYISIYAQIQMEQDIMKQIVN
EPMYSHIYNLATLSLPKSEKDYLVVMSDAANIVIFDLHGCKFNAIVSLPYGRTGLRRMEP
GYYLAVSPCGRAILASAIEKFKLAWTVTKNNENLPTVSAPLENSRNKTFVYSTVALDVGY
EVPKFACIEVHFKQPQDEPERTFNPKTEPKYLTFYQLDTNINFLVRCGKKDDEIPLPPTS
SLLVSVPGPLFDYPGGVLVCSTGHLQYFDNNGQLKDECDLPQRENEENSIIITSAVFCSS
NGWLILLQNQFGDLLFTKIQKQCKIQIQYFDTVQIATSLTITNQGTLCVFGEEYSNSFYY
ITESCEDVEEGFVEKTFSPNTENTKIEYFEGHEIKNRLTKLITAPSFRGSQLGDIISIHG
SFNKSSLKITRKGMPTKVLKPIEIGGGCTFVKAVKKDPLNEYDTFIFVSNESTTRIFEFF
EETRELKDSKESLFVTDKKTIDVFFLPAFNNTSSLAQITTEGMRIINDKEKHDWKRDESS
KIICVTANPSQIAIVYDDNQIVLFETDETSLPKEVSSNKVMEIAGQITSIALPQPQTGVR
YVEWLAVSAVNDGLSIVYIVNISKTTEMWSVSSRQILDKTVISMMFLFVPGIGNILHIGH
NEGLLTRTNLDDSNGSLDNATLKFLGNAPVTFSRCEVKNQNSILINCASPWYTKGLSLVQ
LSSSPFVSCCQYKAPFFIDDSFIGLTTNNMVLFYTPDKNILIDTQTLDLDMTPRQIVHIP
NTKFVCVLMSDLIKGKWKSQAKLVNYDELISSEPLQLDDNLLVSAACYLENYNLVAVCVA
KNLSFFPKRCDGGQVLLLDIGSGIPKVVQSTDFDDIPQAIAPFGEYVILGVQETLMVLKV
GRTKLLKKCCSKAFPHCINYLKAFGTRIIAGDAMESFHFVKFDKEEDILSIFADDMVPRH
PLSAIGLDRSTVCCGDKFGSFCILRLPPDINDDAEIDPSDVGHAFENEKFPGAKNKVELS
NMYHIGSPITGLCLSQGDFENTSIVYGTVDGEIGLFIPLKTDTDARLFRLLEDEMKKLIK
SPVGRFIEQFRSYYTPLKCVNDSNLLLSYIDLPTNLQKEIAEKLKVKPFDLSRLLAKVDS
SI
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgattagattgtaccattcagttattcaacctccacaacatgtcaaatgttgcaccgtt
ggtaaatttactggtacatctaaccctgattatgacgaaattgctgttagtttaggaact
tatatttcaatttacgcccaaatacaaatggagcaagatattatgaagcaaatcgttaat
gaaccaatgtattctcatatttacaatcttgcaacactttctctccctaaatcagaaaaa
gattatttggttgttatgtcagatgcggctaatattgttatattcgatttacatggatgc
aagttcaatgcaattgtatcattaccatatggaagaactggtttaagaagaatggaacca
ggttattacttagcagtatcgccttgcggccgtgctatacttgcatctgctattgaaaag
ttcaaattagcatggacagttacaaagaacaacgaaaatttgcctacagtttcagcacca
cttgaaaattcacgtaataaaacgtttgtttacagcactgttgccttagatgtcggctat
gaagttcctaaattcgcttgtatcgaagttcacttcaaacaaccacaagatgaaccagaa
agaacatttaaccctaaaacagaaccgaaataccttacattctatcaattagatacaaac
atcaacttcttagtccgctgtggcaagaaagatgatgaaattcctttacctccaacttca
tctcttttagtttcagttccaggacctttatttgactatccaggtggtgttttagtctgt
tccaccggccacttgcagtatttcgacaacaacggacaactaaaagacgaatgtgattta
cctcaacgagaaaacgaagaaaactctataattattacatcagcagtcttttgcagtagc
aatggctggcttattctcttacaaaaccaatttggtgatcttttattcacaaaaatccag
aaacaatgtaaaattcagatccaatacttcgatactgtccaaattgcgacttctttgacc
attacgaaccaaggtactctttgtgtcttcggagaagaatactccaactccttctattac
atcacagaaagttgtgaagacgtcgaagaaggttttgttgaaaaaacattttctccaaat
acagaaaacacaaaaattgagtatttcgaaggtcacgagatcaagaacagactgacgaaa
ctgatcactgctccttcatttagaggcagccaacttggagacatcatttctatccatgga
tcattcaataaatcatcactaaaaataacaagaaaaggaatgccaacaaaagttttgaag
ccaatagaaatcggtggcggatgcacatttgttaaagctgttaagaaagatccactcaat
gaatatgatacattcattttcgtgtcaaatgaatcaacaacaagaatattcgagttcttt
gaggaaacaagagaattaaaagattcaaaagagtcactttttgtaaccgataaaaagacg
atagatgtatttttccttcctgcattcaacaacacgagttcccttgctcagatcacgacg
gaaggaatgcgaatcatcaatgataaagagaaacacgactggaaaagagatgaatcatca
aaaattatatgtgtaaccgcaaatccctctcaaattgctatcgtttatgatgacaaccag
attgtccttttcgagacagatgaaacaagcctaccaaaggaagtatcttcaaataaggtt
atggaaatagccggccaaataacttctatcgctttgccacaaccgcaaacaggtgtcaga
tatgttgagtggttagcggttagtgcggttaatgacggtttgtcaattgtttacattgta
aacatttcaaaaacgacagaaatgtggtcggttagttccagacaaattttagacaaaacg
gttatttctatgatgtttctttttgttccaggaattggaaatattttgcatataggacat
aacgaaggtttgttgacaagaactaacctggatgattcaaatggaagccttgataacgca
acacttaaattccttggtaatgcacctgttacgttttcaagatgtgaagtgaaaaaccaa
aacagtattttgataaattgtgcatcaccatggtatacgaaaggattaagtttagtacag
ttatcaagtagtccttttgtttcttgctgccaatataaagcacctttctttattgacgac
agttttatcggtttgacaacaaacaacatggttttgttttacacacctgataagaacatt
ttgattgatacacaaacattggatttggacatgactccaagacaaattgttcatattccg
aacacaaaatttgtttgtgttttgatgtctgatttaattaaaggaaaatggaaatcacaa
gcgaaacttgtgaattatgatgaattaatatcatctgaaccactccaattagatgataat
ttgttagtttccgcagcttgttacttggaaaattacaatttagttgctgtttgcgtagca
aagaatttgtcatttttcccaaagagatgcgatggcggccaagttttgcttcttgatatc
ggaagtggaattcctaaagttgttcaatctactgacttcgatgatatccctcaagcgatt
gctccatttggagaatacgttatacttggagttcaagaaacattgatggttttgaaggtt
ggcagaacaaaactcctcaagaaatgttgttccaaagctttcccacattgtataaattac
ttaaaagcatttggaacaagaattattgctggagatgcaatggaatcattccatttcgtg
aaattcgacaaagaagaagatattttgtcaattttcgcagatgacatggttccaagacat
cctttatcagcaattggcttggatagaagcactgtttgttgcggggacaagtttggatcg
ttttgcatattgagattgcctcctgatattaatgatgacgcagaaatcgatccttctgat
gttggccacgcatttgaaaacgaaaaattcccaggagcaaagaacaaagttgaattatca
aatatgtatcacattggttcgccaattacaggtttatgtctctcacagggtgactttgaa
aatacatcaattgtttatggaactgttgatggagaaatcggattgttcatccctctaaag
actgatacagatgcaagattgtttagattgttggaagatgaaatgaagaagttaattaag
agtcctgttggaagatttattgaacaattcagatcttattatactcctttgaaatgtgtg
aatgattctaatttattgctatcttatattgatttgccaactaatttgcagaaagaaatt
gcagagaaattaaaagtcaaaccatttgatctttctagactattggcaaaggttgattca
tctatttaa
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