Trichomonas vaginalis: 5467834
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Entry
5467834 CDS
T01022
Symbol
TVAGG3_0380640
Name
(RefSeq) pre-mRNA cleavage required for polyadenylation
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tva
Trichomonas vaginalis
Pathway
tva03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
5467834 (TVAGG3_0380640)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tva03021
]
5467834 (TVAGG3_0380640)
03019 Messenger RNA biogenesis [BR:
tva03019
]
5467834 (TVAGG3_0380640)
Transcription machinery [BR:
tva03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
5467834 (TVAGG3_0380640)
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
5467834 (TVAGG3_0380640)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_2
Torus
PTEN_C2
zf-CCCH_3
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
5467834
NCBI-ProteinID:
XP_001583266
UniProt:
A2DBS7
LinkDB
All DBs
Position
V:complement(21887973..21888668)
Genome browser
AA seq
166 aa
AA seq
DB search
MWYFHNLQNQQQNLEFKFEPVLREVDENEERDLKNYISNLSRNEKNNFHQVVCDKWINTH
CVHGDRCQSLHEYNIDKMKKCQFWEKFHECSNKFECIFRHELTDRIGTECKYYNSGFCKH
GDKCNRKHTPRDAICLNYLAGFCPDGPRCLFAHPKWVDDIRIEKEN
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
atgtggtacttccacaacctgcaaaaccaacagcaaaaccttgaattcaaatttgaaccc
gtgctgagagaagtagatgaaaatgaagaaagagatctcaaaaattatatctcaaatctt
tcaaggaatgaaaaaaataactttcatcaggttgtttgtgataaatggataaacacacat
tgtgtacatggagaccgttgtcaatcgcttcatgagtataacatcgataagatgaaaaaa
tgtcaattctgggaaaagttccatgagtgttcgaacaagtttgaatgcattttccggcat
gaattaacagatagaataggaacagaatgtaaatattataatagtggattttgtaagcat
ggagataaatgcaatagaaagcacacgcctcgtgatgcgatatgtctcaattatcttgca
ggattttgcccagatggtccaagatgcctctttgcccatccgaagtgggttgatgatata
agaattgaaaaagaaaattag
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integrated database retrieval system
