Trichomonas vaginalis: 5468620
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Entry
5468620 CDS
T01022
Symbol
TVAGG3_0529570
Name
(RefSeq) histone deacetylase class I, eukaryotic type family
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
tva
Trichomonas vaginalis
Pathway
tva03082
ATP-dependent chromatin remodeling
tva03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
5468620 (TVAGG3_0529570)
03083 Polycomb repressive complex
5468620 (TVAGG3_0529570)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tva03036
]
5468620 (TVAGG3_0529570)
Enzymes [BR:
tva01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
5468620 (TVAGG3_0529570)
Chromosome and associated proteins [BR:
tva03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
5468620 (TVAGG3_0529570)
HDAC complexes
Sin3A-HDAC complex
5468620 (TVAGG3_0529570)
BRAF-HDAC complex
5468620 (TVAGG3_0529570)
REST complex
5468620 (TVAGG3_0529570)
SHIP complex
5468620 (TVAGG3_0529570)
MiDAC complex
5468620 (TVAGG3_0529570)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
5468620 (TVAGG3_0529570)
Heterochromatin formation proteins
Other heterochromatin formation proteins
5468620 (TVAGG3_0529570)
Chromatin remodeling factors
NuRD complex
5468620 (TVAGG3_0529570)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
DUF5613
Motif
Other DBs
NCBI-GeneID:
5468620
NCBI-ProteinID:
XP_001584047
UniProt:
A2D935
LinkDB
All DBs
Position
II:11905122..11906462
Genome browser
AA seq
430 aa
AA seq
DB search
MSTKQRVVYFYDEDIGNFYYAPNHPMKPHRVRMAHNLILAYDLLPKMRVLRPRRATATDM
TRFHSDEYVQFLQMVNPENEGKQNGLFDKFNVGEDSPIFEGLFEFCQISAGSSISAAQEL
NNGTADIAINWAGGLHHAKKAEASGFCYVADCVLGILKLLERYERVMYIDIDIHHGDGVE
EAFYTSDRVLTVSFHKYGEFFPGTGHWTDVGLGRGKHYSVNVPLNDGMDDISYQNIFRPI
MSRLVEWYRPQAILLQCGADSLTGDRLGSFNLTIKGHASCVEYMKSFGIPMIVTGGGGYT
VRNVARCWAYETAVVLGEEIEDKLPYNDYLGYYGPDYRLHLQPSNMDNFNTPEYLNELQA
NIIDSIRHLPCAPCVQLWKQEDKLNGLLEDSDDNDDDIYDDRLSSKYLTAKLRLNTLTGQ
EIDEDDIPPR
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgaagcaaagagttgtctacttttatgatgaagacattggcaacttctattat
gctccaaatcacccaatgaagccgcatcgtgtaagaatggcccataatctcattcttgcg
tatgatttacttccgaaaatgcgagttcttcgaccaagaagggcaacagccacagacatg
acccgcttccatagtgatgaatatgtacagtttttgcaaatggtaaatccggaaaatgaa
ggaaaacaaaatggtcttttcgataaattcaacgtcggagaagattctcctattttcgaa
ggactcttcgaattttgtcaaatttctgcaggtagttcaatatctgcagctcaagaatta
aacaacggtacagctgatattgcgattaactgggccggcggccttcaccatgccaagaaa
gctgaagcaagtggcttttgctacgttgcagattgtgttcttggcattctcaagctttta
gaacgttacgaaagagtaatgtatatcgatatcgatattcatcacggtgatggtgtcgaa
gaagctttctatacatcagacagagttttgacagtctcttttcacaaatacggtgaattt
ttcccaggaacaggacattggaccgatgttggcctaggaagaggcaagcactactcggta
aacgtaccattaaacgatggtatggacgatatatcctaccaaaacatcttcagacctatc
atgtctcgtttagtcgaatggtatcgtccacaagcgattttacttcaatgcggagcggac
tctcttacaggagatcgcttaggatcctttaatttgaccattaaaggccacgcttcctgt
gtagaatacatgaaatccttcggaatcccaatgatcgtcacaggcggtggcggttataca
gttagaaacgtcgctcgttgctgggcttacgaaaccgccgtagttctcggcgaagaaatc
gaagataagttaccatataacgattatctcggatattacggaccagattaccgattacat
ttacagccatcgaacatggacaacttcaatacgcctgaatacctcaacgaactccaagca
aacatcattgacagtattcgccaccttccttgcgccccctgcgtccagctttggaagcaa
gaggacaaattgaacggccttcttgaagattccgatgataatgatgacgatatttacgat
gaccgcttaagttcgaaatatcttacagcaaagcttcgtcttaatactttgactggacaa
gaaattgatgaggatgatatcccgccaagataa
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