KEGG   Trichomonas vaginalis: TVAG_2v0529650
Entry
TVAG_2v0529650    CDS       T01022                                 
Name
(RefSeq) HRDC-like family
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
tva  Trichomonas vaginalis
Pathway
tva03020  RNA polymerase
tva03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tva00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TVAG_2v0529650
  09124 Replication and repair
   03420 Nucleotide excision repair
    TVAG_2v0529650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tva03021]
    TVAG_2v0529650
   03400 DNA repair and recombination proteins [BR:tva03400]
    TVAG_2v0529650
Transcription machinery [BR:tva03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     TVAG_2v0529650
DNA repair and recombination proteins [BR:tva03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      TVAG_2v0529650
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 5468628
NCBI-ProteinID: XP_001584055
UniProt: A2D943
LinkDB
Position
II:complement(11930568..11931085)
AA seq 119 aa
MATQIKYDEKFITENVCLTNFEVAQRLKSSAFEANQNDDLIGQSYEYALEFSHFQNAEDL
ESIKSYLSDVLSPYEIVTLCNLVPQDAAMAKLCCASLERISDETLQSYLTFIRGLVRSN
NT seq 360 nt   +upstreamnt  +downstreamnt
atggctacgcagatcaagtacgatgaaaagttcattactgaaaacgtctgtctcacaaat
ttcgaagtagctcaacgtctgaaatcgtcagctttcgaagcaaaccaaaatgatgatctt
attggccaatcatacgaatacgctttagaattttcacattttcaaaatgcagaagactta
gaatcaatcaagtcatatttatctgatgtattatctccatatgaaattgttactctctgc
aatttggttccacaagacgcggcaatggctaaactttgctgtgcttcactcgagagaatc
agtgatgaaactttacaatcatatcttactttcatcagaggcttagtccgttcaaattaa

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