Trichomonas vaginalis: TVAG_2v0959040
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Entry
TVAG_2v0959040 CDS
T01022
Name
(RefSeq) pre-mRNA cleavage required for polyadenylation
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tva
Trichomonas vaginalis
Pathway
tva03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tva00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TVAG_2v0959040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tva03021
]
TVAG_2v0959040
03019 Messenger RNA biogenesis [BR:
tva03019
]
TVAG_2v0959040
Transcription machinery [BR:
tva03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
TVAG_2v0959040
Messenger RNA biogenesis [BR:
tva03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TVAG_2v0959040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH_3
zf-CCCH_4
Mad3_BUB1_I
MAAL_C
Chordopox_A13L
YgbA_NO
Motif
Other DBs
NCBI-GeneID:
4768217
NCBI-ProteinID:
XP_001322507
UniProt:
A2EAT1
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All DBs
Position
I:9697030..9697640
Genome browser
AA seq
166 aa
AA seq
DB search
MWYFHNLQNQQQSLEFKFESVLKEVDQNEENDLKDYINKLSKKDRNSFHQVVCDKWVNTH
CVHGDRCQSLHEYDIDRMKKCQFWEKYHECSNKFECIFRHELTDRIGTDCQYYIRGYCKH
GDKCKRKHTPRDAVCLNYLAGFCPDGPKCLFAHPKWIDDSGIDKNV
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
atgtggtactttcataaccttcaaaaccagcaacagagcttagagtttaagttcgagtct
gtcttgaaagaggttgaccaaaatgaagaaaatgatttaaaagattacattaataaatta
tcaaaaaaagatagaaacagtttccatcaagttgtttgcgataaatgggttaacacccac
tgcgtccatggtgatcgttgccaatcattacatgaatacgatatcgatagaatgaaaaaa
tgtcaattctgggaaaaatatcacgagtgctcgaacaaattcgaatgcattttccgtcac
gaacttactgatagaatcggaactgattgccagtattatattcgtggttattgcaaacat
ggtgataaatgcaagagaaaacatacacctcgtgatgcagtttgcttaaattacttagca
ggattttgtccggatggtccaaaatgcctatttgctcatccaaaatggatcgacgattca
ggtatagacaaaaatgtataa
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