Tenacibaculum vairaonense: T19A02B_0929
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Entry
T19A02B_0929 CDS
T11462
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tvai Tenacibaculum vairaonense
Pathway
tvai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T19A02B_0929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvai03019
]
T19A02B_0929
03400 DNA repair and recombination proteins [BR:
tvai03400
]
T19A02B_0929
Enzymes [BR:
tvai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T19A02B_0929
Messenger RNA biogenesis [BR:
tvai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T19A02B_0929
DNA repair and recombination proteins [BR:
tvai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
T19A02B_0929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
CAL2080187
LinkDB
All DBs
Position
T190524A02B:1119618..1121816
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AA seq
732 aa
AA seq
DB search
MDIEQSDLYESLKKIFGFSKFKGLQEDVVNSILNNHNTFVIMPTGGGKSLCYQLPALMKE
GTAIVVSPLIALMKNQVDAIRGISDNDGIAHVLNSSLNKAEVTKVKSDIESGITKLLYVA
PESLIKEEYVEFLRAQKISFVAIDEAHCISEWGHDFRPEYRNLRNIIKQIDNVPIIGLTA
TATEKVQEDILKTLGMSDANVFKASFNRANLFYEVRPKTKEIEKDIIRFVKQHSGKSGIV
YCLSRKKVEEIAQVLQVNGVDAVPYHAGLDAKTRAKHQDMFLMEDCDVVVATIAFGMGID
KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGYCLTFYSYKDIEKLEKFMANKPVAEQE
VGHALLQEVVGYAETSMNRRKYLLHYFGEEFDEVNGEGADMDDNMRNPKKKNEAQNEVVT
LLTVIRDTNEMYKPKEVVNTIIGKENALLKSHKTTEQKFFGIGKEKDNHYWMALIRQILV
ADFIKKEIEQYGVLKLTKEGRAFIENPSSFMMTENHVYATDDDGTIITNTKASNTGVDSK
LVGILKDLRKSVGKKLGVPPFAVFQDPSINDMALKYPITLDELSKVHGVGEGKAKKYGKE
FIKVISSYVEENDIMRPDDLIVKSTGVNSGLKLYIIQNTDRKLPLDDIASSKGLEMVELI
KEMEAIVFSGTKLNIDYAIEDLLDEDQQEEIYEYFMEADTDKIQDALDEFDGDYDDDELR
LMRIKFTSEVAN
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggatatagagcagtcggatttatatgagtcattgaaaaaaatctttggattcagtaaa
ttcaaaggtttacaagaagatgttgttaacagcattttaaataatcacaatacttttgtg
attatgccaacggggggcggcaagtcattatgttatcaacttccagctttaatgaaagaa
ggaacagctatcgttgtttctccactaatcgctttgatgaagaaccaagttgatgcaatt
agaggaatttcagacaatgatggaatagcacacgttttaaactcctcattaaataaagca
gaagttaccaaagtgaagtcagatattgaaagtggcatcactaaattactgtatgttgca
cctgaatccttaattaaagaagaatatgtagaatttttaagagcgcagaagatttcattt
gtagctatagatgaagcacactgtatttctgaatggggtcatgattttaggcccgaatac
agaaatcttagaaatattataaagcaaatagataatgtacctataattggtttaacggct
actgccacggaaaaggtacaagaggatattttaaaaaccttgggtatgagtgatgctaat
gtgtttaaagcatccttcaaccgtgctaatttgttttatgaagtacgtccaaaaaccaag
gagatagagaaagatatcattcgttttgtaaaacaacactcaggaaaatcaggaatcgtt
tactgtttaagtagaaaaaaagtagaagaaatagcacaagtacttcaagtaaacggagta
gatgctgtaccctaccatgctggtttagatgctaaaacaagagcaaaacatcaagatatg
ttcttaatggaagattgtgatgttgtggtagctactatagcctttggaatggggattgac
aagcctgacgtccgttttgtgattcatcatgatattcctaaaagtttagaaagttattat
caagaaactggtagagcgggaagagatggtggagaaggatattgcttaactttctattca
tataaagatatagaaaagttagaaaagtttatggctaataagcctgttgctgaacaagag
gtaggccatgcattattacaagaagtagtaggttatgctgaaacctcaatgaataggcgt
aaatatttattgcattattttggtgaagaatttgatgaagtaaatggagaaggagcggat
atggatgataatatgcgcaacccaaagaaaaaaaatgaagctcaaaatgaagtagttact
ttacttactgttattagagataccaatgaaatgtataaacctaaagaagtagtgaatact
ataataggtaaagaaaatgcattgttaaaatctcataaaactacggaacaaaagtttttt
ggtataggaaaggaaaaagacaatcattattggatggcattaatacgccaaatattggtt
gccgattttattaaaaaagaaattgaacaatatggtgttttaaaattaactaaagaaggt
agagcttttatagagaatccatcttcttttatgatgactgaaaaccatgtatacgctaca
gatgatgatggaactattataactaatactaaagcgtctaatacaggagttgatagtaag
ttagttggcatacttaaagatttacgaaaatctgtaggtaaaaaattaggtgttcctcct
tttgccgtttttcaagatccttctattaatgatatggcattaaaatatcctattacttta
gatgaactttcaaaagtacatggagtaggtgaaggtaaagctaaaaaatacggaaaagag
tttattaaagtaatttcttcatatgtagaagaaaatgatattatgcgcccagatgactta
atagtaaaaagtactggtgtaaactctggcttaaaactatatattattcaaaatactgat
agaaaacttccattagatgatattgctagttctaaaggtttagaaatggttgaattaata
aaagaaatggaagctattgtgttttccggaacgaagttaaatatagattatgctattgaa
gatttgctagacgaagatcagcaagaagaaatctatgagtactttatggaagcggataca
gataaaattcaagatgcattagatgaatttgatggagattatgatgatgatgaattaaga
ttaatgcgtattaaatttacaagtgaagtagcaaactaa
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