Tenacibaculum vairaonense: T19A02B_3861
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Entry
T19A02B_3861 CDS
T11462
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tvai Tenacibaculum vairaonense
Pathway
tvai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T19A02B_3861 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvai03019
]
T19A02B_3861 (pnp)
03016 Transfer RNA biogenesis [BR:
tvai03016
]
T19A02B_3861 (pnp)
Enzymes [BR:
tvai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
T19A02B_3861 (pnp)
Messenger RNA biogenesis [BR:
tvai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
T19A02B_3861 (pnp)
Transfer RNA biogenesis [BR:
tvai03016
]
Prokaryotic type
tRNA degradation factors
T19A02B_3861 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
CAL2095264
LinkDB
All DBs
Position
T190524A02B:complement(4643346..4645514)
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AA seq
722 aa
AA seq
DB search
MIPKVFSQVIELGDGRTITLETGKLAKQADGSVVVRMGDTMLLATVVSARTANPGIDFLP
LTVDYREKFAASGRYPGGFMKREARPSNEEILTMRLVDRVLRPLFPKDYHAETQVMIQLM
SHDENVMPDALAGLAASTAIQLSDIPFEAPISEVRVARINGEFIVNPSFAQLKEADIDLM
VGASIDFVAMVEGEMDEVSEEEMAEAIKVAHEAIKVQCQAQIALTEAVGKKETREYELEV
TDEELEAKIKEAAYQKCYDIAKKGTSKQERGLAFSEVKEEILATFSEEELEEKGELISKY
FNKAHKAAVRDLTLNEGLRLDGRTTTDIRPIWCEVDYLPRTHGSSIFTRGETQALATVTL
GTSRDANMVDSPTIQDEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKGMVP
EDCPYTVRVVSEVLESNGSSSMATVCSGTMALMDAGVQLKKPVSGIAMGLISDGDRYAVL
SDILGDEDHLGDMDFKVTGTAEGITACQMDIKIKGLSYEILVKALKQARDGRLHILEKLT
DTISQPNETVKSHAPKMVTVRVAGDYIGAIIGPGGKHIQELQKETETTIVINEDEVTEEG
IVEILGTSQVGIDKVIARIDAITFKPQRGSIYEVKVVKLLDFGAVVEYTEAPGNEVLLHI
SELAWERTNNVSDVVKIGDILDVKYFGVDPKTRKEKVSRKALLPRPPREDKKPRQEKKET
QK
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgattccaaaagtatttagccaagttatagagcttggagatggaaggacgattacgtta
gaaactggaaaattagcaaaacaagcagacggttctgttgttgtacgaatgggagacaca
atgttacttgctacagtagtatcggcaagaactgctaaccctggtattgattttttacca
cttaccgtagattatagagagaaatttgctgcatcaggacgttatcctggcggtttcatg
aaacgtgaagctagacctagcaatgaagaaatattaaccatgcgtttagttgatcgtgtt
ttgagaccgttgtttccaaaagactatcatgctgaaacacaagttatgattcaattaatg
tctcatgatgaaaacgttatgccagatgctttggctggtttagctgcatctacagctatt
cagttatcagacataccttttgaagctcctatttctgaagttcgtgtagctagaataaat
ggtgaatttattgtaaaccctagttttgctcaactaaaagaagctgatatagaccttatg
gttggagcttctatagattttgtggctatggtagaaggtgaaatggatgaagtttcagaa
gaagaaatggcagaagctattaaagtagctcatgaagctattaaagttcaatgccaagct
caaattgctttaactgaagctgtaggtaaaaaagaaactcgtgaatatgagcttgaagta
acagacgaagaacttgaagctaaaatcaaagaagctgcttatcaaaaatgttatgatata
gctaaaaaaggtacatctaaacaagaaagaggtctagcattttctgaagtaaaagaagaa
atattagctactttttctgaagaagaacttgaagaaaaaggtgagttaatttctaaatat
tttaataaagcacataaagctgcagtaagagatttaacgttaaatgaaggtttacgttta
gatggtagaacaactacagatattcgtccaatatggtgtgaagtagattatttaccaaga
actcatggttcatcaatatttacacgtggagaaactcaagcattagctaccgttacttta
ggaacttctagagatgctaatatggttgatagtcctacaattcaagatgaggaacgtttt
tatttacattataacttccctcctttttcaactggggaagctcgtcctttaagaggtact
tctcgtcgtgaaataggtcatggaaacttagctcaacgtgcattaaaaggaatggttcct
gaggactgcccatatactgttcgtgttgtatctgaagtattagaatctaatggatcatct
tctatggctaccgtttgttctggtactatggctttaatggatgctggtgttcaattgaaa
aagcctgtttctggtattgcaatggggttaatttcggatggagatagatatgctgtttta
tctgatattctaggtgatgaagatcatttaggagatatggattttaaagtaactggaact
gctgaaggtattactgcttgtcagatggatattaagattaaaggactttcctatgagatt
ttagtaaaagcgcttaaacaagctcgtgatggtcgtttacatatcctagaaaaattaaca
gacaccatttctcaaccaaatgaaactgttaaatcacacgcacctaaaatggtaaccgtg
agagtagctggagattatattggtgctattataggtcctggaggaaaacatattcaagag
ttacaaaaagaaactgaaactactattgtaattaatgaagatgaagttactgaagaaggt
attgttgaaattttaggtacaagtcaagtaggtattgataaagttatcgctagaattgat
gctattacttttaaaccacaaagaggtagtatttatgaggtaaaagttgtaaaattatta
gactttggagctgtagttgaatatacggaagctcctggaaacgaagttctattacacata
tctgaacttgcatgggaaagaaccaataatgttagtgatgtagtaaagattggtgatata
ctagatgttaaatactttggtgttgacccaaaaactaggaaagaaaaggtttctagaaaa
gccttattaccaagaccccctagagaagataaaaaacctagacaagaaaaaaaggaaact
caaaaataa
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