Tachysurus vachellii: 132839373
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Entry
132839373 CDS
T09596
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
tvc
Tachysurus vachellii
Pathway
tvc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132839373 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvc03021
]
132839373 (taf5)
03036 Chromosome and associated proteins [BR:
tvc03036
]
132839373 (taf5)
Transcription machinery [BR:
tvc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
132839373 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
132839373 (taf5)
Chromosome and associated proteins [BR:
tvc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
132839373 (taf5)
STAGA complex
132839373 (taf5)
TFTC complex
132839373 (taf5)
SAGA complex
132839373 (taf5)
SLIK complex
132839373 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
TFIID_NTD2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_DCAF12
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
WD_LRWD1
PEP5_VPS11_N
CDK5RAP3
VPS8_N
LisH_TPL
LisH_PAC1
Motif
Other DBs
NCBI-GeneID:
132839373
NCBI-ProteinID:
XP_060716291
LinkDB
All DBs
Position
24:complement(8092508..8099317)
Genome browser
AA seq
737 aa
AA seq
DB search
MAAVHDGPSDIESEKETKPDALSDESPSNLPGIMSGTLSTSLHGSTTASAVAPKTEEQQQ
TLLAVLQFLKRNKLTESVDILRREAGLQEEPEEDRGAEAAAPGLNSGCGDASSLLSRVSA
QSGAPAKGGDDQPDVSVVLSAYSQQGDPSLYQVYYSGLKKFIESVLDCHRAELSQLFYPL
FVHMYLELVYNNHETEAKAFFEKFSGDQECYYHDDLHVLSGLTKKAHMKGNETLLDFRTS
RFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKNQIDSTSGSLAGEA
VREANKAKVYYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSMGSKSKKQDPNAPQ
QNRIPLPELKDSDKLDKIMYMKEATKRLRLGAETLPSICFYSFLNAYQGLTAVDVTDDSS
LIAGGFADSTVRVWSVTPKKLRKVKSSAELGLIDKESDDVLERIMDEKTSSESKILYGHS
GPVYAVSFSPDRNYLLSSSEDGTIRLWSLQTFTCLVAYKGHNYPVWDTQFSPHGYYFVSG
GHDRVARLWATDHHQPLRIFAGHLSDVTCTRFHPNSNYLSTGSADRTVRLWDVLNGNCVR
IFTGHKGPVHSLAFSPNGKFLASGSTDGRVLLWDIGHGLMFGDLKGHSDTIYALKFSRDG
EILASGSMDNTLRLWDVTRAIDDVETDDFTAATGHIHLPDNSQELLLGTYLTKSTPVIHV
HFTRRNLLLAAGAYTSQ
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgttcacgacggaccgagcgacatcgagagcgagaaagaaacaaaacctgac
gctctgagcgacgagtcgccatcaaacctgcctggaataatgagcgggacgctttctacg
tcgcttcacggctccacaacggcttctgctgtagcaccgaagacagaagagcagcagcag
actttactcgccgtgctgcagttcttaaagaggaacaaactcacggagtcggtggatatt
ctgcggcgtgaggcgggtttacaggaagagccggaggaggatcgcggggcagaagctgca
gccccggggctcaacagcggctgtggggacgccagctcactcctcagcagggtgtctgct
caaagcggcgctccggctaaaggtggagacgaccagccagatgtcagcgtcgtcctctcg
gcatacagtcagcagggggatccttcgttgtatcaggtgtactacagcgggctgaagaag
ttcatcgagtccgtgctggactgccacagggccgagctgtcgcagctcttctacccgctc
ttcgtgcacatgtacctggagctggtttacaacaaccatgaaactgaagcgaaggcgttt
ttcgaaaagttcagcggtgaccaggaatgctactaccacgacgatctgcacgtgctttcc
ggcctcaccaagaaggcgcacatgaaaggcaacgagactctgctggatttccgaacgagt
cgcttcgtgctgcggatttcccgcgactcctaccagctgctgaagcggcaccttcaggag
cggcagaacaaccagatctggaacatcatccaggagcacctttacatcgacatcttcgat
ggcatgccacgcagcaagaatcagatcgacagcacgtccggcagcctggccggagaagca
gtccgagaggccaacaaagctaaggtgtactacggattgctgaaggagccagagatcgag
gtccctctcgacgatgaagacgaagaggccgagaacgaagagggcaaacccaagaagaag
aaacccaagaaggacagcatgggttcaaaaagcaagaagcaggatcccaacgcaccacaa
caaaacaggattcctctaccagaactgaaggactctgataaactggacaaaatcatgtac
atgaaagaggccacgaagaggcttcgtctgggtgctgaaactctgccctccatatgcttc
tactcattcctcaacgcttaccagggtctgacagccgtggacgttacagacgactccagt
ctgatagccggaggcttcgccgattccacggtgcgcgtgtggagcgtgacgcccaagaaa
ctccgcaaggtcaaatcctcagcagaactcggtctcatagacaaggagtcagatgacgtg
ctagaaaggataatggacgaaaaaacatccagcgagtccaagatcctgtacggccacagc
gggccagtgtatgccgtcagcttcagtcctgacaggaattatctgctgtcgagttcagaa
gacggcaccatcaggctgtggagcttgcagactttcacctgtctggtagcttataaagga
cacaattatccagtgtgggacactcagttctctccacatggatactactttgtgtctgga
ggacatgacagagtggcacggttatgggccactgaccatcaccagcctctgcgtatattc
gccggccatctctccgacgtcacctgcacacgcttccacccaaactctaactacttgtcc
acgggctcagccgatcgcaccgttcgcctctgggacgtcctgaacggcaactgcgtccgc
atttttaccggacacaagggacccgtccactcgctggcattctcaccgaacgggaagttt
ctggcgtctggctcaaccgacggccgggtcctgctgtgggacattggccacggactcatg
tttggcgatttgaagggtcacagcgacaccatctatgctctcaagttcagcagagatggc
gagatcctcgcctcaggctccatggacaacacgctccggctgtgggacgtcaccagagcc
atcgacgacgtggaaacggacgatttcacagcagccacgggtcacattcacttacccgac
aactctcaggagttattactgggaacgtatctgaccaaatccacccccgtcatccacgtt
cacttcaccagacgcaacctgctactggctgccggcgcgtacacctcccagtga
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