Tachysurus vachellii: 132839514
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Entry
132839514 CDS
T09596
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
tvc
Tachysurus vachellii
Pathway
tvc03430
Mismatch repair
tvc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132839514 (pms2)
03460 Fanconi anemia pathway
132839514 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132839514 (pms2)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
132839514 (pms2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
132839514
NCBI-ProteinID:
XP_060716520
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Position
2:complement(16990305..16997248)
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AA seq
846 aa
AA seq
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MTDPSSDPARAIRAIDKRSVHQICSGQVVLTLATAVKELVENSIDAGATQVDIRLKENGT
ELVEVSDNGRGVEEENFEGLTLKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSDLSVV
TCHESSHVGTRLVFDHNGRLVQRAPHPRQQGMTVSLQQLFSTLPVRHKEFQRNIKKEFSK
MVHVLQSYCIISTGVRITCTNQLGQGKRNTLVCTSGSQSMRDNIGALFGPKQLQSLLPFQ
QISPNESVKEDYGLTGEQLPKDLFKISGYVSQADHGVGRSATDRQFFYINKRPCDPSKVS
KLINEVYHMFNRHQYPFVALNISVASECVDVNVTPDKRQIFLQEEQLLLATMKSSLIAMY
ETGVNKISLNHTPLITGSFSRCGDSAKSSEGLRKASLSGLTSEDDSETLTQTPKTSFNLA
GLKAAFSKHQDTSVTTKTSNSKTLRNGPTQKKMQSFFHCSEMTNYSRPSDCASDLSKHEH
KSDIEADSGLSEQSSFTQTPDTLCGSSSEFDSPDSVLEEHSVKTESCVSVSVDEVHDGLE
ATKKETLSVINTERISSPKAKKCRWDDDLSEQLQLPSSSASGASCGLFDKPVSVQRKTVP
LQFSMTELVKRMERLKTQKQKQNDKELKYRRFRAKINPGENQSAEDELKKEISKDMFKEM
EIIGQFNLGFIITKIKSDLFIIDQHATDEKYNFEMLQQHTVLKGQRLIIPQNLHLPAVSE
TILIENLEIFKKNGFDFLIDENAPVMERVKLISVPTSKTWTFGPGDIEELIFMLSDSPGV
MCRPSRVRQMFASRACRKSVMIGTALNPSEMKKLVVHMGEIEQPWNCPHGRPTIRHLLNL
DVISQD
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgacagaccctagctcggatcctgccagagccatcagggccattgataaacgttctgtg
catcagatctgctctgggcaggtggtgttgactttggccacagctgtgaaagaactggta
gagaacagcatcgatgcgggtgccacacaagttgacatcaggctcaaagagaacgggacc
gagctggtggaagtctctgacaatggacgaggtgtggaggaggaaaacttcgaaggactg
actttaaagcaccatacatcgaaactgagagatttctccgacttaattcatgttgagact
tttggcttccgtggtgaagccctgagctcactatgtgccctcagtgacctcagcgtggtt
acctgtcatgaaagcagccatgttggaactcggctcgtctttgaccacaacggccgtctt
gtccagcgagctcctcatccccgacagcaggggatgacggtcagccttcagcagctcttc
tccaccctgccagttcgccacaaagagtttcagcgcaacatcaaaaaggagttttctaag
atggtccatgtcctccagtcatactgcatcatctctactggtgtgcgaatcacatgcact
aatcagcttgggcaaggcaagcgtaacactttagtgtgcaccagcgggagccagagcatg
agagacaacattggagcactgtttggcccaaaacagctccagagtctacttccttttcag
caaatatctcccaatgagagtgttaaagaggattatggattaactggggaacaacttcct
aaagaccttttcaagatctctggttatgtatcacaagctgatcatggtgtgggacgaagc
gcaacagaccggcagttcttctatatcaacaaaaggccctgtgatccatctaaggtttcc
aaacttataaacgaggtgtatcacatgttcaaccgtcatcagtacccatttgttgctcta
aacatttctgttgcttcagaatgcgttgacgtcaacgttacaccagataagcgtcagata
tttctgcaggaggagcagctgttgcttgctacaatgaagagctctctcattgccatgtat
gagactggagtcaataaaatcagtctcaatcacacaccactaatcacaggcagtttttcc
agatgtggtgattctgctaaaagttcagaaggtcttcggaaagcttcactgagtggattg
acttcagaggatgattcagagactttgacacagactccaaagacatcatttaacttagct
ggactaaaggcagcattttcaaaacatcaggatactagtgtcacgacaaagacgtctaac
agtaaaactctgcgtaacggtcctacacaaaaaaagatgcagtcttttttccattgctca
gaaatgactaactacagcagaccatcagattgtgcttcagacctaagcaaacatgaacac
aagtcggacattgaggctgattcaggtctgtcagagcaaagctctttcacacaaacccca
gacacactgtgtggaagcagctctgaatttgactctccagactctgttttagaagaacat
agcgttaaaacagagtcttgcgtcagtgtgtctgtggatgaggtgcatgatggtttagaa
gcgacaaagaaagagacattgtctgttattaatactgaaaggatttctagtcccaaggca
aagaaatgtaggtgggatgatgacctatctgaacagctccaactgccatcctccagtgcg
agtggtgcttcctgtggactgtttgacaaaccggtcagtgtgcagagaaaaacagtgccc
ttgcaattttcaatgaccgagctggttaaaaggatggagagattaaagacccagaagcaa
aagcagaatgataaggagctaaaatatagacgcttcagggcaaaaattaaccctggtgaa
aatcagagtgctgaggatgagttgaagaaagaaataagcaaggacatgtttaaggagatg
gagatcattggtcagttcaacctgggttttatcattaccaagataaagtcagatcttttc
attattgaccagcatgccacagacgaaaagtacaactttgagatgctacagcaacatact
gtcctaaaaggacagagacttataattccacagaatctccaccttcctgctgtaagtgaa
acaattctgattgaaaatctggaaatcttcaagaaaaatggctttgacttcctcattgat
gagaatgcaccagtcatggaaagagtgaagctgatatctgtacccacaagcaagacctgg
acctttggccctggtgacattgaggagctcatcttcatgcttagtgacagtcctggagtc
atgtgccgcccttctcgagtcaggcagatgtttgcgtcgagagcatgccgcaaatcagta
atgattggtactgcactgaatcccagtgaaatgaagaagcttgtggtccacatgggggaa
attgagcagccttggaactgtcctcatggccggccgaccattaggcacctgctgaatctt
gatgttatttctcaggactga
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