Tachysurus vachellii: 132839646
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Entry
132839646 CDS
T09596
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
tvc
Tachysurus vachellii
Pathway
tvc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
132839646 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tvc04131
]
132839646 (vps8)
Membrane trafficking [BR:
tvc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
132839646 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
Clathrin
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
WD40_CDC20-Fz
zf-RING_Vps41
zf-RING_UBOX
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_2
zf-RING_11
Beta-prop_WDR5
PHD_4
zf-C3HC4
Beta-prop_WDR3_1st
ANAPC4_WD40
EIF3I
zf-C3H2C3
Beta-prop_EML_2
WDR55
Motif
Other DBs
NCBI-GeneID:
132839646
NCBI-ProteinID:
XP_060716716
LinkDB
All DBs
Position
24:complement(10998145..11107705)
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AA seq
1420 aa
AA seq
DB search
MSESPDTRSLVSASSQLNLMEIDAIDDKEFDIPQVDTPPTLESILNEPEDEDEPFVLEDT
CLLNTENMDAHSCETSSLASSDSGDRAHLKRRRKAVETNATVHGSVLRHNVLKGISAQLV
SAADKVDAGLPTAITVSSVIAVGTSHGLALVFDQHQALRLCLGTTATGAEYGAVSALSIN
HDCTRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDLPTLAVCNDSGGSV
FELSFSRRVMGMRTCESRCLFSGSKGEVCCVEPLHAAPELKDHPITHYCLLAMASLTKIL
VIGLKPSLKVWMTFPYGKTDPASVPQLAWQFVAAQKAVNPILAFCRGNTVHFLLVKKDES
GTVHVIKQRQLQLNCDLISLTWMNPRTLVLMDSGEKLHVVDRPSQEELETLDLAEVQLVY
NSSHFKSLATGGNVSQALALVGEKACYQSVCSYGGQIVYLGTKSVHVMTLRNWRERIDHF
LKQEKFTEALSLAWSFHEGTAKAVLGLFGDPAKRKGVVADKMVEILFQYVERSLKKCPEQ
GKIQLLEQHFQDMIPVVVDYCLLLQRTDLLFNQIYSRLVENSVAKGVFLESLEPYILSER
IGCLTAPVMRDLLSYFQENGMMESVEGCLVHMDITNLDIQQVVQMCWDNQLYDAMIYVFN
SGMNDYISPMEKLFQVIGPPLREGKPLTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDL
VPQVKNQVFEFLIRLHTLEAIKEEEVYPYIRTLLHFDTREFLNVLALTFEDFKNDKQALE
YQQRIVDILLKVMVDNSDFTPSQVGCLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCSPD
DDSRHTERQQVLLELLQVGGMVQFDEGRLLHLAEKAEFYQICEFLYEQKHLYDRIIACYL
KDPLRKEEVYNYIHNILSMPGYSPEEKQTTWNKSLEHIKDLVSINPAKAAELVAGHFLSE
VEPIITALQDDHLVFQFLRNLLNPSDGQKPKAVMNLGPELHELLVDLMCRFSPRQVTPFL
ETSQSYRLEETIEITKKHKLHEATAYLLEKKGDVQGAFQVLLQTLKEKLNTLVQESSHPA
TLRPEGGEMEVTDEDYTPLSRVEEALSDVIALCHRSSHGLNQQQREALWFPLLEVMMSPQ
KFLKGPKAKDTSDALKELTMKVLNSMSSFIALPAIIQRILQDPVYGKGKLAEIQGLILGM
LETFTYEQTLLETTTNLLNSDLHWSLAHLRKAVSRGLHPRQDHCNICLQQYKRRQESEEE
IIIFSCGHLYHCQCLQRKEQGVVGKDLGLAGDRVHSWICYKCTSSKGARPGDRLLAEAGR
ARSTSLAQTKVTSVHRGSATETRHRKELTEVTLDAQQTQAWDQLRCMYRGPSRLAILTEL
TQSHGSERAGLLNPAHPGTGNIYHSENLSLRLSPPPMVEE
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtctccggatactcggagtttggtgtcggcgtcttcacagctcaatttaatg
gaaatagatgctattgatgacaaagagtttgacatccctcaagttgacactccgccgact
ttagagagtattctgaatgagcctgaggatgaggacgaacccttcgtcctggaggacaca
tgccttttgaacacagagaacatggatgcgcattcctgtgagacgtcttccctcgcgagt
tcagacagtggagaccgtgcacatctaaagagaaggaggaaggcagtagagaccaatgca
acagtccacggctcagttctgagacacaatgtactgaaaggcatctcggctcagctcgtc
tccgctgctgacaaagttgatgcaggcttgccaacagcaatcactgtatccagtgttatc
gccgtgggaacgtcgcatggccttgctctggtctttgatcagcaccaggcgctgaggctg
tgcttgggtaccacggcgacaggagcggagtatggtgcagtgtctgctctcagtattaac
catgactgcacacgtctgctgtgtggctttgctaaaggacaaattaccatgtgggatttg
gctaacgggaagctcctgcgcaccatcaccgatgcccatccacccggcacggccattttg
cacgtcaagttcacagatctaccgacgcttgctgtgtgtaacgacagcggcgggtctgtc
tttgaactatcgttcagcaggagggtgatggggatgaggacatgtgagtctcggtgtttg
ttcagtggcagtaagggggaggtgtgctgcgttgagcccctgcatgcagcccctgagctt
aaagaccatccaatcactcactactgcctgctggccatggcctcactcaccaagattcta
gtgatcggactgaagccgtctctaaaggtctggatgacttttccatatggcaagacagac
cctgccagcgtgccccagttggcatggcagtttgtagcggcacagaaagcagtgaacccc
atcctcgccttctgtagaggaaacactgtccacttcctgctggtgaagaaggacgaatct
ggaactgtccacgtcatcaaacagcgacagctccaactcaactgtgaccttatcagtctg
acatggatgaatcctcggactctggtgttaatggacagtggagagaagctgcacgtggtg
gatcggcccagtcaggaggagctggaaactctggacctggccgaggtgcagcttgtctac
aacagcagtcattttaaatcgcttgctacagggggcaacgtcagccaggctctggctttg
gtgggagagaaggcttgttatcagtctgtgtgcagctacggaggccagatcgtctacctg
ggaacaaaatctgtccatgttatgactctcagaaactggagagagcgcatcgatcatttt
ctgaagcaggagaagtttaccgaggcgctctctttagcctggtctttccatgaaggcaca
gctaaagcagtactgggtctgttcggcgaccctgccaagcggaagggagtggtggctgac
aagatggtggagatcttgttccagtatgtagagcgatcgctaaagaagtgtcccgagcaa
ggcaagatccagctgctggagcaacacttccaggacatgattcctgtcgtggtggattac
tgtctgctcctgcagaggacggacctgctgtttaaccagatctactcgaggctggtggag
aactcggtggctaaaggcgtcttcttggagagtctggagccgtacattctgagcgagcgg
atcggctgcctgacggctcccgtcatgagggacctcctcagttacttccaagaaaatggt
atgatggagagtgtggagggctgcctggtgcacatggacatcaccaacctggacatacag
caggtggtgcagatgtgttgggacaaccagctgtacgatgccatgatatacgtgttcaac
agtggcatgaacgattacatcagccccatggagaagctctttcaggtgatcggtcctcca
ctgcgagaaggcaaacctctcacagatgaacaggttgtcatgggaaataagctccttgtc
tacattagttgttgtctagcaggacgagcctatcctttaggggacattccagaagacctt
gtgccacaagttaaaaatcaggtgttcgagttcctgattcgtctacatacattagaggcc
atcaaggaggaggaggtgtatccgtacatccggaccctgctgcacttcgacacacgcgag
tttctcaacgttctggcactgacgttcgaggattttaaaaatgacaaacaggctttggag
taccagcaaaggatcgtggacattttactcaaggtcatggtggataactcagacttcacc
ccttcccaggtgggctgcctgttcacctttctcgctcggcagcttgccaaaccagacaac
accctcttcgtcaacaggaagttgtttgatcaggttctggagtttctgtgcagtccagat
gacgactccagacacacggagaggcagcaggtgctgttggagttgctgcaggtgggaggc
atggtccagttcgatgaaggacgactcctccacttggcagaaaaggcagaattctatcag
atctgtgagtttttgtatgagcagaaacatctgtatgaccgaatcattgcctgctacctg
aaggaccccttaagaaaggaggaggtttataactacatccataacatcctgtccatgcct
ggctacagtccagaggagaagcagaccacgtggaacaaatccctagagcacattaaggac
ctggtcagtattaaccccgctaaagcggccgagctggtggctggtcactttctcagcgag
gtcgagcctatcatcactgcactacaggatgatcatttggtcttccagttcctgagaaac
ttgctgaatccaagtgatgggcagaagcctaaggctgttatgaatctggggcctgagctc
cacgagctcctggtggacttgatgtgccgttttagtcctcgccaagtcaccccctttctc
gagacctcccagagctaccgtctggaggagaccattgaaatcaccaagaagcacaagctc
catgaggctaccgcctacctgctggagaaaaagggagatgtgcagggagcctttcaagtg
ctgctacagacactgaaggagaagctgaacacactcgttcaggagagttcacatccagcc
acactgaggcctgaaggaggggagatggaggtgactgatgaagattacaccccgctgtcc
agggtggaggaagcccttagtgacgtcattgcactgtgtcaccggagctcacatgggctt
aaccagcagcagagagaggctctctggtttcctctcctagaggtgatgatgtctccacag
aaatttctcaaaggccctaaagccaaggacacttcagatgcactaaaagagctcaccatg
aaggtgttaaacagcatgtccagcttcatcgccctgcctgccatcatccagcgcatccta
caggaccctgtgtacgggaagggaaagttagcagagatccaaggcctgatcctgggcatg
ttggaaactttcacctacgaacagaccctgttggagaccactaccaatcttctgaattcg
gacctgcactggtctctggctcacctgcgtaaggccgtcagcagaggactccaccctcga
caagaccactgcaacatctgcctgcaacagtacaaaaggaggcaagagagtgaggaggag
atcatcatcttcagctgtggtcacctgtatcactgtcagtgcctgcagcggaaggagcaa
ggggttgtgggtaaagatctcgggctcgcaggagatcgggttcattcgtggatctgttat
aaatgcacgtccagtaagggagctcgtcccggagaccggctgctcgccgaggcaggacga
gctcgatccacctctctggctcagaccaaagtaacatccgtccatcggggatccgccacc
gagacccgtcacagaaaggagctgactgaagtgacgctggacgcccagcagacacaggca
tgggaccagctgcgctgcatgtacagaggaccctccagattggcgatccttacagaactc
acgcagtcccacggcagcgagagggccggcctgctgaaccccgctcacccaggaacagga
aacatctaccacagtgaaaacctcagcctcaggctttctccaccaccaatggtggaggag
tag
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integrated database retrieval system
