Tachysurus vachellii: 132840250
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Entry
132840250 CDS
T09596
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
tvc
Tachysurus vachellii
Pathway
tvc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132840250 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tvc03032
]
132840250 (topbp1)
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132840250 (topbp1)
DNA replication proteins [BR:
tvc03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
132840250 (topbp1)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
132840250 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Med30
Motif
Other DBs
NCBI-GeneID:
132840250
NCBI-ProteinID:
XP_060717750
LinkDB
All DBs
Position
25:7644810..7666833
Genome browser
AA seq
1531 aa
AA seq
DB search
MSKESRDVYMVKFVECNGHKSELGIKAYEAIVKLQSEKYVQAIDEGSVLELEHNDKSLYV
FSDFTSDAFEHCRKLGCRIVSPLVVLFCLQHQRCVPKAEQPVYNMAMADVTVCCTSLDKD
ARTEVMDLVQLMGGRVYRDLNVSVTQLVAGEVGSKKYLVAASLGKPILLPTWVRACWEKS
QDSLFRYTDLRMEDYHCPVLKGCTVCVTGLSTVERKEVQRLCELHGGSYTGQLKMNECTH
LIVSEPSGQKYEFAKKWNVFCISIHWLFDSIEKGFCQDESRYTVEREDKRKEKPGRPNTS
TPTGSHKTDGPSLLGLSHISNVSMNVNETAMTTAIVSRIETADPIDTFDPTICPTDDLLD
GCKLYLCGVVGKRLEKLRRLVNSAGGLRFNQLGEELTHVVMGEPDQDVQSFLAKASHRPH
IVTVHWLLDSFSHGSLLPVESYFHPSFLPPAPAHMEIPAPRPVASHPSRPSFAALPAPSP
NRHARAEEELLSQYVDNNQTVVEIAPAPDNKNNTCRSELLDPAAPGYDSTVAESSDGGLF
IGKRFLLVGFGSEAEAQLSMLVVENYGKVLVGRFRGVADYAIVPLLGCEVEATVDEVVTD
TWLAMCVEQQCILPVSSHPLFTPVVVKEGCSPLRDCVLSVSQFSGAERESLIQLARHLGA
SVQDYFVRTANQRKGMLASTHLVLQTPEGTKYQAAQKWGLPAVTIHWIIESARTGKRAEE
RRYLVDLPPSPDHSEASFIGVSQKAADPPVPVRLSPEIPLLGPQSSTSVTPLDMGRLQSR
SVHSVLRKLKKGEEGEVEATTPAQEESRGSLQKELQLDTPSRFLSRDKLFGPSFNIKDVF
DHLKTPGNKPLHSEGAETPLSEVIERNLKAAVANSNRSHVMTLAALTASPQLGKEPERNI
NKQVEEKTSAPLAGVVLCVSKKLIKKQNELNAMAASLGADFRWSCDNSVTHYIYQGKVGD
NTKEYKAVKERSLHIVSQHWLQACAEEQKRVPESLYPFTFNPKMSLMLSQVTDSTQKSPP
LSTTRSKRRPLIDDDDDDDDDDDARIGLVDITADISTPQREPTESEQHQPTSSERKDLTE
TLEMRENLQRQLQEIMSATKLTSGRRASSRLARMGSGGLDSPHTPEMLGRMGRRSRTLEA
LRMSRQAAVDVNTEASQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPLAILPPPHT
DQTAHVFMTDSELVDIAACGVIEEHMKRTENPTSVNTVPEGSKKPETPRPAFSISKSSML
ADLELEEEEEIEKKVVRKEPPRFQLSSLNPQERIDYSHLIEELGGILLEKQCFDPSCTHI
IVGYPLRNEKYLAAMAAGKWILHRSYLEACRAEGYFIPEEDYEWGSHSILDALPSINSQQ
KRLALSALRWRKSLQGCEDKDGAFGGWTVMLNIDQARDAGFRRLLQSGGAKVLPSSSPSL
YKETTHLFADFSRLGPNDVRVDVTEAVAYGVKCLRPEYIADYLMQDPSPPMDAYYLPGEV
VNENSHQGQNTPSRKRKASEDIAAVKKSRVR
NT seq
4596 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagagagccgggatgtgtacatggtgaaatttgttgaatgtaatggacataaa
agtgagcttggcatcaaagcttatgaggccatagtgaagctgcagtctgagaaatatgtg
caggctattgatgaaggatctgtgctggagttggaacacaacgacaagtccttgtacgtg
ttcagcgatttcactagcgatgcattcgaacactgcaggaagctggggtgcaggatagtg
agtcctctggtagtgctgttctgccttcagcaccaaaggtgtgtaccaaaggcagagcag
ccagtttacaacatggccatggctgatgttacagtgtgctgcaccagtctggacaaagat
gcacggacagaagtgatggacttggtccagctgatgggtgggcgggtctaccgagacctc
aatgtgtctgtcactcaactggtagcaggtgaagtgggcagtaaaaagtacctggtggct
gccagcctagggaagcccatccttctaccaacctgggtcagagcatgctgggagaaatct
caggacagtttgttccgatacacagacctgcgtatggaggattatcattgtcccgttctc
aaaggctgcactgtgtgtgtgactggactttccacggtggagcgtaaagaggtgcagagg
ctgtgtgaactgcatggagggagctacactggccagctcaaaatgaacgaatgcactcac
ctcattgtcagcgaaccctcaggtcagaagtacgagtttgcaaagaagtggaatgtgttc
tgcatctccattcactggctgtttgacagtattgagaagggtttctgtcaggatgagagt
cgttacactgtagaacgtgaggacaagcggaaggagaagcctggaagacctaacacctcc
actcccactggctcacataagacggatggaccatctttgcttggactgagccatatctca
aatgttagcatgaatgtcaacgaaaccgccatgacaactgcaatagtgagccgcatagag
acagcagatcctatcgacacatttgatcctaccatctgtccaacagatgacttattagat
ggctgcaagctatacctgtgtggtgtggtggggaagaggttggagaaactgcggcggttg
gtaaactctgcaggaggcctgcgcttcaatcagcttggtgaagaacttactcacgttgtg
atgggagaaccagaccaggatgttcaaagctttcttgctaaagcctctcatagaccacat
atcgtcacagtgcactggttgctggacagtttttctcatggctctctgcttccagtggag
agctacttccacccttcattcctccctcctgctccagcccatatggaaattcctgccccc
cggcctgttgcatcacacccctccaggccatcttttgctgccctgccagcccccagccct
aaccgacatgccagggctgaggaagaattactctcacaatatgtggacaataaccagact
gtagtggaaatagctccagccccagataacaaaaacaacacttgcaggtctgaactgcta
gacccagctgcaccagggtatgactctactgtagctgaatcctcagacggaggtttgttt
attgggaaacgcttcctcctggtgggcttcggttcagaagcagaggcacagctctctatg
ttggttgtggagaactacggaaaggttttagttggtcgtttcagaggcgtagccgattat
gctatagtgcctctgctaggctgtgaggtggaggccacagtggacgaagtggtcacagac
acctggctggcaatgtgtgtagagcagcagtgcattctgccggtgtcgtctcatccattg
ttcaccccagtagtggtgaaggagggctgctctcctctcagagactgtgtgctgtcagtc
agccaatttagcggtgcagagagagagtcactcattcaacttgccagacatctgggagca
agtgtacaggactattttgtgcgcactgctaatcagagaaaaggcatgttggctagcact
catcttgtcctacagactcctgaaggcaccaagtaccaggcagcacagaagtgggggctg
cctgctgtgaccatacactggataatagagtcagccagaacgggcaaacgtgctgaggag
agacgctatctggtggatctgccaccatctcctgaccacagtgaggccagtttcattgga
gtatctcagaaagccgcagaccctcctgtacccgtgcgtctctctccagagattcctctg
ctaggtccacagagcagcacctctgtaacaccgttggacatgggacgtctgcagagccgc
agcgtccactccgtactccgcaagctgaagaaaggtgaggagggagaggtagaggccaca
accccagctcaagaagaaagcagaggaagcttgcaaaaagaacttcagcttgatacacca
tcacgcttcctcagtagagacaagctttttggaccttcctttaacattaaggatgtgttt
gaccatttaaaaacccctggtaataagcctctgcacagtgagggggcagagactccccta
agtgaggtgatcgagaggaatttaaaagcagctgtggccaatagcaaccgtagtcatgtc
atgacccttgctgccctgactgcaagccctcaactgggcaaagagccagaacgtaacata
aacaaacaggtagaggaaaagacttcagctccacttgctggagttgtgctttgtgtgagt
aagaaactcattaaaaagcagaatgagctaaatgcaatggctgcatccctcggagcagac
ttcaggtggtcttgtgataattcagtcacccactatatctaccagggcaaagtgggagac
aacactaaagagtacaaggcagtgaaggagagaagcctgcacatagtgtcccagcactgg
ctgcaggcgtgtgcagaggagcagaaacgagtgcctgagtcactctaccctttcaccttt
aaccctaaaatgagcctgatgctgagccaggtgacagacagcacccaaaaatctcctccc
ctttctacaacccgctctaaacgcagacctctcatcgatgatgatgatgatgatgatgat
gatgatgatgcacgaattggacttgtggacatcacagcagatatttctactcctcagaga
gagcctacagagagcgagcagcatcaaccaaccagtagtgaaaggaaagacttgacagag
actctggagatgagagagaacttgcagaggcagctacaggagattatgtctgccacaaaa
ttgaccagtggtcggcgagcatcctctagattggcccgaatgggttcagggggtctagac
tctccacatactcctgagatgttgggccgaatgggtagacgcagcaggacactggaggct
ttacgtatgtcccgtcaggctgcagtggatgtgaacacagaagcgtcccagagtgagcag
atagtgtgggacgaccccacggcaagagaggagagggcaaagttggctgataatctgcag
tggccaggcagtccatctcaacattcagaacctcttgccattctccctccaccgcacact
gatcaaacggctcatgtcttcatgaccgactccgaactggtggacatagctgcctgtggt
gtaatagaagagcacatgaaacggacagaaaacccaacaagcgttaacactgtgcctgag
ggttctaaaaagcctgaaaccccaaggcctgctttctccatctccaaatcttcaatgctc
gctgacttagagcttgaggaagaggaggagattgagaagaaggtggtgaggaaggagcct
ccacgcttccagctgtcttcacttaacccacaggagcgcattgattacagtcaccttata
gaggagctgggtggtatcttactagaaaagcagtgttttgaccctagctgtactcacatc
attgtgggttatcctctgaggaatgagaaatacctggccgccatggcagctggcaaatgg
attcttcaccgctcgtacctggaggcctgtcgcgctgagggatacttcataccagaggag
gattatgaatggggtagccactctattctggatgctcttccctccataaactcccaacag
aaaagactggcactatcagccttgcgctggagaaaatcattgcagggttgcgaagataaa
gatggagcatttggtggctggacagtgatgttgaacatagaccaggccagagatgcagga
ttcagaagattgctgcagtctggaggagcaaaggtattgccaagctcgtctccctccctg
tataaggaaaccactcatctcttcgcagacttcagccggctaggaccaaacgatgtgaga
gtggatgtgactgaggccgttgcttatggagttaaatgcctcagacctgagtacattgct
gattacctcatgcaggacccttcaccaccaatggatgcatattatcttcctggagaagtg
gtgaatgaaaactcccaccaaggacagaacaccccctcacgcaagcgcaaggcctcagag
gacatagccgctgtgaagaagagcagagttaggtga
DBGET
integrated database retrieval system
