Tachysurus vachellii: 132840757
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Entry
132840757 CDS
T09596
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
132840757 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132840757 (lig3)
Enzymes [BR:
tvc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132840757 (lig3)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
132840757 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
132840757
NCBI-ProteinID:
XP_060718687
LinkDB
All DBs
Position
26:4877908..4887523
Genome browser
AA seq
1004 aa
AA seq
DB search
MHGLGFFRTARTLCRTFHLCQTQGTRPLQQCSRPLIQALAWGFALTERQPSRHFGLTSLS
YFAVSRAVWQDDRSTMAEQRFCVEYAKRGQAGCKKCKDKIMKGLLRIGKIVPNPFSESAG
EMKEWYHVKCIFEKLERARATTKKIEDITDLDGWEELQNEDKELINKLVADLAAKANASP
KKKVQAKLNTSGQISSPLADPTVNAPRKFSGFTATKAGPSSSSPGPSPAKASQGSILSAQ
FCQPDHKDCLFREFRKLCAMVAEKSSYNAKTEIIKDFLKKGSGGDKFMGDLYLTVKLLLP
GVVKSVYNLNDKQIVKLFSRILNCNQDDMVRDLEQGDVSETVRMFFEDCKSFPPSTKSLL
TIQEVDASLTRLAKLTKEDEQQAELEAIAKKCTGNDLKCYIRLVKHDLKINSGAKHVLDA
LDPNAYDAFKASRNLGDVVDRVLRNQEEASNGGGPRKLLSIEATLMTPVQPMLAEACKSV
EYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKEFIPLAFAGG
HSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVCLFVFDCIYFNGVSLMDKPLCE
RRKFLHDNMVEVPDRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKDVKGLYEPGKRH
WLKVKKDYLNEGAMADTADLVVLGAFYGTGSKGGIMSSFLMGCYDPDSKKWCTVTKCSGG
YDDATLARLQKELDVIKIGKEPSKIPPWLKIVKNYYPDFLIRDPEKAPVWEITGAEFSKS
EMHTADGISIRFPRCTRMRDDKDWKTATNLHQLKELYRVSKERCDFEVTPGPSTSIKDEK
ESSGGDSGGGSPSTSNEAASSTKAKNGHTPKPKPVKPKKPATPAPAKRKLPAKEHETKKI
KVETVRSNGQSKAKASPSKAADPQSEKTLLNIFTGVKLYLPESVPEFDKLRRYFVAYDGD
LVPDFAAASATHTLAEPEENSQAQKVSSNWIWQCIRKRRVVPPC
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggctcggttttttcaggacagctagaaccctctgtaggactttccatctgtgc
cagacacaaggtacacgtccactccagcagtgcagccgccctctgatccaagctttggct
tggggctttgccttgacagaaagacaaccatcaagacacttcggtctcacgtctttatct
tactttgccgtctctcgggccgtgtggcaggacgaccgttcgaccatggcagagcagaga
ttctgcgtcgagtatgcaaagcgaggccaggcaggttgtaaaaagtgcaaggacaagatc
atgaaggggttgctacgcatcgggaagattgtgcctaacccgttcagtgagtctgctgga
gaaatgaaggagtggtatcacgtaaagtgcatcttcgagaagcttgaacgcgcacgggcc
acaaccaagaagatcgaggacattactgacctggatggctgggaggaattgcagaatgag
gataaagagctgatcaataagcttgtagcagatctagctgctaaggctaacgcaagtcca
aagaagaaggtgcaagccaagttaaacaccagtgggcagatatcatcccctcttgccgat
ccgacagtgaacgcgccacgcaagttttccggcttcacagcaacaaaggcaggtccctcc
tcatcgagcccaggaccgtctcctgccaaagcctctcagggcagcatcttgtctgctcag
ttttgccagcccgaccataaggactgcttgttccgcgagttccgaaagctttgcgccatg
gtggctgaaaagtctagctacaacgcgaagacagagatcatcaaagacttcctaaagaag
ggttctggcggagacaagtttatgggcgatctctacctgacagtgaagctgctcctccca
ggcgtcgtgaaaagcgtttacaacctcaacgacaagcaaattgtgaaacttttcagccgc
atccttaactgcaaccaggacgacatggtgcgcgacctagaacagggagacgtctcagaa
acagtgcggatgtttttcgaagattgcaagtcttttcctccttcaaccaagagtctgctg
actatccaggaagtggacgcttctctaacacgcttggctaagcttactaaagaagatgag
cagcaggcagagctggaggccattgcaaaaaaatgcacagggaacgacttgaaatgttac
attcgtctagtgaaacatgacctgaagattaattctggtgccaaacacgtcctggatgct
cttgaccccaacgcctacgacgccttcaaagcctctcggaaccttggtgacgtggtcgat
agagtcctgcgcaatcaggaggaggcgtccaatggagggggcccgagaaagctcttgagt
atcgaggccacgcttatgacccccgtgcagccaatgctggcagaagcctgcaagtccgtt
gagtacgccatgaagaaatgccccaatggaatgtactcggagatcaagtacgatggcgag
cgcgtgcaagtgcacaaaaacggagatcatttcagctacttcagccgcagcctcaaacct
gtgctgcctcacaaggtggcgcattttaaagagtttattcctctggcgtttgccggaggc
cacagcatgattctagacgctgaagttctcctgattgataccaagactagtaagcctcta
ccgttcgggacgttaggtgttcacaaaaaagcggcgtttcaagacgcacaagtctgcctg
tttgttttcgactgcatttatttcaatggcgtcagtcttatggacaagccgctctgcgag
agaagaaaatttcttcatgacaacatggtggaagttccggacaggattctgttttccgag
atgaagcacgtcacaagagctgctgacctggctgaaatgatcacacgagtcatcagagag
ggactggagggactcgttctgaaagacgtcaaggggctgtatgaacctgggaaacgccac
tggctgaaggtgaagaaagactatctgaatgaaggagcaatggccgacactgcagatttg
gtggttttgggggcattttatggaacaggttcaaaaggtggaattatgtccagtttcctc
atgggttgctatgatcctgactcaaagaaatggtgcacggtgacgaaatgctccgggggc
tacgacgacgccacactagccagactgcagaaggagctggacgttattaaaattggcaag
gagcccagcaagatcccaccctggctaaaaatagtgaagaactactatccggattttctc
attcgagatcctgagaaagccccagtttgggagatcacaggagcagagttctccaagtcg
gaaatgcacacggccgacggcatctccatccgttttccacgctgcactcggatgcgtgac
gataaggactggaagacggctaccaaccttcaccagctcaaggaactttaccgagtctcg
aaggagcggtgcgactttgaggtgacaccaggaccgtctacaagcatcaaagatgaaaag
gagtcgtcaggaggagacagcggtggtggctcaccgtccacctccaatgaagcagcaagt
tcgacgaaagccaaaaatggtcacactccaaagccaaagccggtgaaacccaagaaacct
gcaactccggctcctgccaagaggaagctgcctgctaaggaacacgaaacaaagaagatt
aaggtcgaaaccgttcgcagcaacgggcaaagcaaagcaaaagcctctccgtctaaagca
gctgacccacagtctgaaaagaccctgctgaacatcttcaccggtgtaaagctgtacctc
ccggagtcggtaccggagttcgacaagctgcggcgctactttgtggcgtacgacggcgat
ctagttcccgatttcgccgccgcctctgcaacacacacgctagccgagccagaggagaac
agtcaagcccagaaagtcagctccaactggatctggcagtgcatcaggaaaagaagagtg
gttcccccttgctga
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integrated database retrieval system
