Tachysurus vachellii: 132840913
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Entry
132840913 CDS
T09596
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
tvc
Tachysurus vachellii
Pathway
tvc03015
mRNA surveillance pathway
tvc04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132840913 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
132840913 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvc03021
]
132840913 (sympk)
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132840913 (sympk)
Transcription machinery [BR:
tvc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132840913 (sympk)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
132840913 (sympk)
U7-dependent histone pre-mRNA processing factors
132840913 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
GNC1_N
Rep_Org_C
Motif
Other DBs
NCBI-GeneID:
132840913
NCBI-ProteinID:
XP_060718976
LinkDB
All DBs
Position
26:5199749..5209484
Genome browser
AA seq
1242 aa
AA seq
DB search
MESNSGEKQQRSSMASQFFTETEDASIDMTTNEKVVDLLNQAALMATDDKLTALKQVQEL
IINKDPSLLDNYLDEMLAFQNDKSIEVRKFVIGFIEEACKRDNELLLKLLGNLNIMLKDE
SVNVVKKAILTLTHLYKVTLQWLLRTKSISDVQEGCWDMVTQMKGDVLALLDSDNDGVRT
HAIKFTESLIITLSPRTSDSDVPKKQEGDISLDKVPKDHSYIRYDVLCEEGKSALEQLLK
FMVHPAISSINLTTALGSLATLARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKSL
KLHLVAVLRHQSSVDFHSQISTLLLDLGMAQNEIARCMPAAAQVRKRPRHEPYSEGKRIK
IEPAEDDDDKEEPAPVIAPKPLATTGTQSAIDLTAEFLLPLLSPENVANLVLISMVYLPD
NMPASFQATYTPVESAGTDSQIKHLARLMATQMTSSGLGPGLEQCKARDEEGKEGEAESA
VAETSSKDPIIIRKVSAVSLGQAISVVGAYKTEATEETPQAKKLPEPILPSTQPKAPGSS
GRKKVFRLADVVQPLSESQLDKLTSMAVRRILQSEKAIARSGMSHVRVKLLARLITQFKG
AMKDDMLRFILEDIRSRIDLAFALLYQEYNQYLSQLPSGSLESYEHSLFTLLSGLQERPE
QRDGLFNKLVLEAPLITESALEVIRRYCEDETRVYLGMPTLKDLILKRPSRQFQYLHVLL
DLSSHEKEKVRSAALNIIKWMYEKDHLRDYIEKFALNYMQLLVHPNPPSLLFGVGEDTEV
AAPWTEETVRQCLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQPIRGMGMNS
PDLLLLVENCPKGAETLVTRCLHILTDKVPPSPDLVERVRDLYHKRVPDVRFLIPVINGL
EKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGELLIALHNIDSTKCD
MKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMN
ILSRLIPKQVWKYPKVWEGFVKCCQRTKPQSYTVLLQLPPAQLASVFERCPEMRDPLLQH
VRSFTPHQQAHIPSSIMAILEANTRIPEPEPPQHEPEHMKVPEEREIHSQQFVRPITQVE
TPAPVVVAPPEPAPSESIARREEMEEPMEEGEAGNEGLEIATEATTQVEVLEHESGATSV
SQAKAEEPMETSITEPEPAEDHPREVVEESGAEPEMRANDPE
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggagtccaactctggagaaaagcagcagcgctccagcatggcatcccagtttttcacc
gagacagaggatgcgtctatcgatatgaccactaacgaaaaggtcgtggaccttctgaac
caggctgctttaatggccaccgatgataaactcactgctcttaagcaggtgcaagagttg
attattaataaggatccttcactgcttgacaattacttggatgagatgttagcgtttcag
aacgataaatcaattgaagtgaggaaatttgttattggcttcatcgaagaagcatgtaaa
agagacaacgagctgcttctgaagctgttggggaatttaaacataatgttaaaagacgag
agcgtcaacgttgtgaagaaggccatactgactctcactcatctctacaaagtgacactg
cagtggctactgcggacaaagagcatctcggacgtgcaggagggatgctgggacatggtg
acccagatgaagggagacgttctggctctgctcgactccgacaacgacggcgttcgcacg
cacgccatcaaattcacagagtcgctcatcatcactctgtcaccgcgcacgtccgattcg
gacgtccccaagaagcaagaaggggacatcagcctggacaaagttccaaaggatcattcg
tatattcgctacgatgtcctgtgtgaagagggaaagtctgctctggagcagctcctgaag
ttcatggttcacccggcaatctccagcattaacctgaccacagctctaggctcactggct
acgctagccagacagagacccatgttcatgtccgaggtcatacaagcttacgagactcta
cacgcaaacctccctccgactcttgccaagtctcaggtgagcagcgtacgtaagagcctt
aagctgcatctggtggctgtgctgcgtcaccagagcagcgtggacttccacagccagatc
tccacactcctgctagacctggggatggcccagaacgagatcgcccgctgcatgcccgct
gccgcacaggttcgcaagagaccacggcacgagccttacagcgagggcaagaggatcaaa
atagaacccgctgaggatgacgacgataaggaggagccggcacccgtcattgctcccaag
cctctggccaccacaggcacgcagtctgctatagatctcaccgctgagttcttgctgcct
ctgctctcgccagagaacgtggccaacctggtgctcattagcatggtttacctgccggac
aacatgccagcctccttccaagctacttacacacctgtggagtcagcaggcaccgattcc
caaatcaaacatctggccaggctcatggccacacagatgacctcaagtggacttggccca
ggtctggagcagtgcaaagccagagatgaagaagggaaggaaggagaggccgagtctgct
gtggccgagaccagttctaaagatcccatcatcatccggaaagtgtcagcggtgtctctg
ggtcaggccatctctgtagtgggggcctacaagaccgaagccacagaggagactcctcag
gccaagaaacttccagaacccattctgccttctacacagccaaaagctcctgggagcagc
ggacgaaagaaagtcttccggctggccgacgtggtccagcccctgtccgaatcccaactg
gataagctaaccagcatggccgtcagacgcatcctccaatcggaaaaggccatcgcaaga
agcgggatgtcccacgttcgcgtgaaactgctagcaagattgatcacgcagttcaagggt
gcgatgaaggacgacatgctgcgtttcatcctggaggatatccggagccgcatcgacctg
gcgttcgctcttctttatcaggagtacaaccagtacctgagccagctgccgtccggatcg
ctggaaagctatgagcacagcttgttcactctgctctcgggcctacaggagcggcctgaa
cagagagacgggctgttcaataagctggtgcttgaggctcctctgatcacagaatcagcc
ctggaggtgatccggcgctactgtgaggacgagactcgtgtttacctcggcatgcccact
ctgaaagatctcatcctgaaacgtccttccagacagtttcagtaccttcacgttctcctg
gatctcagctctcacgagaaagaaaaagtccgctcagcagctctgaacatcatcaagtgg
atgtatgagaaggaccacctgcgagactacatcgaaaagtttgctctgaactacatgcag
ctgctcgtccacccgaacccgccgtcgcttctgttcggagttggagaggacacagaggtg
gctgctccctggacggaggagacggtgagacagtgtttgtacctctacctttccctcctt
cctctcaatcaccgcttggtccacgagttagccgccgtctacaccgaagccatcgccgac
atcaagcgcagcgtgctccgcgtcatcgagcagcctatcaggggaatgggcatgaactct
cctgatctgctgctgcttgttgaaaactgtcccaagggagcagagactttggtcactcgc
tgtctgcacatattgactgataaagtccctccgtctccggatctggtggagcgagtacga
gatctctatcacaaacgagtgccagatgtgcgcttcctcatcccggtcatcaacggcttg
gaaaagaaagaggtgatccaggctttacccaaactcatcaagctcaaccctatagtagtc
aaggaggtcttcaatcgcctgctgggcacgcaacacagtgaaggaagttcctccgtgtct
ccgctgactcccggtgaactcctcatcgctctccataacatcgactccacaaagtgtgac
atgaagtccatcatcaaagctacgaacctgtgcttcggtgagaagaacgtgtacacatca
gaagtgctggctgtggtgatgcagcagctaatggagcagagtcctcttcctatgctgctc
atgcgaaccgtcatccaatcgcttacaatgtaccctcgcctaggcggcttcgtcatgaac
atcctctctcgcctgatccccaagcaggtgtggaagtaccccaaggtgtgggaaggtttt
gtgaagtgctgccagcgcaccaagccacaatcttacaccgttctgctgcagctgcctcct
gctcagctagccagcgtgttcgagcgctgtccagagatgagagatcctctcctacagcat
gtgcgctccttcaccccacaccagcaagcccacattccatcatccatcatggctattttg
gaagctaacaccaggataccagagccagaaccaccccagcatgaacctgaacacatgaaa
gtgccggaagaaagagagatacactcccagcaatttgtgaggcccataacgcaagtggaa
actccagctccagttgtagtagctcctcctgaacctgcaccttctgagtcaatagccaga
agggaggaaatggaggagcctatggaggaaggagaggcaggtaacgaaggtctagagatc
gccaccgaagcaacaacacaagttgaagtacttgaacatgaatccggagccaccagtgtt
tcccaggcaaaggctgaggaaccaatggagacgagtatcactgagcctgagcctgctgaa
gaccacccccgagaagtggtggaggaaagtggagcagaacctgagatgcgagcaaatgat
cctgaataa
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integrated database retrieval system
