Tachysurus vachellii: 132840982
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Entry
132840982 CDS
T09596
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvc03041
]
132840982 (ythdc2)
Enzymes [BR:
tvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132840982 (ythdc2)
Spliceosome [BR:
tvc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
132840982 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
DEAD
R3H
Ank_2
HA2_N
AAA_19
ATPase
Ank
nSTAND3
AAA_22
PhoH
ABC_tran
AAA_7
ResIII
SRP54
AAA_23
AAA_29
AAA_30
FtsK_SpoIIIE
Zeta_toxin
TrwB_AAD_bind
AAA_16
Motif
Other DBs
NCBI-GeneID:
132840982
NCBI-ProteinID:
XP_060719096
LinkDB
All DBs
Position
26:complement(14474956..14488353)
Genome browser
AA seq
1425 aa
AA seq
DB search
MSRSNSTAWKAHTNPSKTSSLKGKGLKDIRVNEEVKIAVNIALERFQYSDQREMEFPSSL
TSTERAFVHRLAQSLGYVSKSRGKRIHRVLTIWKKDSPESAQSIMTFKLTHNSKLVVQNL
LQRFPITSKERTDLLQRTERGLVASPEAAGNGKDKNRISGPLNNKIPQVPQKRGPSELES
FRRSLPVYERQEEIVTTIKENQVVLIVGETGSGKTTQIPQFLLDDCSQKGNPCRIYCTQP
RRLAAIAVAERVAAERGESVGQTIGYQIRLESRVSPKTLLTFCTSGVLLRTLMAGDTVLS
SVTHVIVDEVHERDGLTDFLLTKMRDVLQKMPSLKLILSSAALDVDLFIRYFGLCPIIYI
KGRPYDVKSVFLEDILRTTGYTNKEMAKYKSEIQKEAKQQTSLTEWCEVKGGASPPESQK
IQHSDTVLPDTDLLDNGGDSVFCQMSEKDVTSLEPWLVKEMDSCISTIFLQQDAGAFAQL
FNLIVNENVSVDYRHFETSATPLMVAAGRGFITQMEQLLSMGANVHLKASNGWTALDWAK
QFNQTEAVDLLESHISSLEAGHLDESSLVQSHSEELSAQDQELLKAYHHSFDDEKVDLDL
IMHLLFNICQSSDEGAVLIFLPGYDEIVGLRDRILFDDKRFADHQQRYQVFTLHSNMQTA
DQRKVLKPAPCGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKAFDSLNHVTMLKMVWI
SKASAIQRKGRAGRCRPGICFHLFSRLRYNNMLEYQVPQLLRMPLQELCLHTKLLAPFTC
SIAEFLAKAPEPPHLLTVKSAVQMLKTIDAMDPWEDLTKLGYHLADLPVEPHLGKMVLCA
VVLKCLDPILTIACMLSYREPFVLPSQASQKRAAMLCRRCFSANTFSDHMALLRAFQAWQ
KARSDGWERSFCEKNFLSQATMEIIIRMRTQLLGQLRAIGFVRARGCNDIRDVNLNSENW
AVVKAALVSGMYPNLILINRDKQTLRGAKEKKVRFHPASILSQPQYKKIPPANSQAVAVQ
SLPTDWLIYDEMTRAHRIASVRCCTAVTPITVAVFGGCAKLPSTALQEPSTPHVLDNALG
EDSDSENETRSTDQLAQMKIDEWLNFKLDQEMASMVFQLRQRWHSLFLRRIQCPSKPWSQ
LDEATIRAVVSVLSSEEQAAGLQQPTGIGQRPKPISSEEPQHQLNSSKGNRHRSGVEQSY
EAPTPDRSPKVPTAVSQAKSQRDKGAAFSKRSADDHLPVKSDSPSLSSPSVSPSSTSSAK
EPAARMSPLTGVSKSPSPRSRPSVRYFIMKSSNMRNIELSQQRSIWSTTPNNEHKLNRAF
QESSTVFLIFSVQGSGHFQGYARMSSEIGSERCKDWGATGLGGVFSVEWIHKESLSFQFT
HQLLNPWNENKKVQISRDGQELEPQAAAQLLQLWNSFSNKQQHEP
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggtcgaactccaccgcttggaaagcacacacgaacccgtcaaagacgtcttca
ttaaaaggcaaagggctgaaagacatcagggtcaatgaagaagttaagattgcggtgaac
attgcgctggagaggttccagtacagcgaccagagagagatggagtttccttcttcgctg
accagcacagagagagcattcgtacatcgcctcgcacaatctctgggttacgtttcaaaa
agcagaggtaaaagaatacaccgtgttctcacgatatggaagaaggactctccagagtca
gctcagtccattatgacctttaagcttacccacaattccaagcttgtggttcagaacctg
ctgcagaggttcccaattaccagtaaagagcgtactgatctgctccaacgcaccgagaga
gggctcgtggcttctcccgaagctgctggtaatggaaaagacaagaacaggataagcggg
cccctaaataacaaaatcccacaggtccctcagaagagaggcccctctgagctggaatcc
tttcggagatcgctgcccgtctacgagcggcaggaggagattgtgaccaccatcaaggag
aaccaggtggtgctgattgtgggtgaaacgggctcaggaaaaaccacccagattcctcaa
ttcctgttggacgactgcagccaaaaaggaaatccctgtcgcatctactgtacgcagccc
agaaggttggctgctattgctgtggcggagcgagtggcagcagagagaggagagagcgtc
ggtcagaccatcggatatcagatccggttggagagcagagtttctcctaagaccttacta
acgttctgcacaagtggcgtgttgctcagaacactgatggccggagacactgtcctctcc
tctgtcacacacgtcattgtggacgaagtccacgagcgagacggcttgacggatttcctc
ctgaccaagatgcgggacgtgctccagaagatgccttctctgaagctcattctctccagc
gctgccctggatgtggaccttttcatcagatactttggcctttgcccgattatttacatt
aagggacggccgtatgacgtaaaaagcgtttttctggaggacattttgcgaaccactggc
tacacaaacaaggagatggccaaatataagtcagaaatccaaaaagaagcaaagcagcag
acgtctcttacagagtggtgtgaggtaaaaggaggcgcgtcaccgccagagtctcagaaa
atccagcattctgacaccgtcctgccggacactgacctgctggacaacggaggggacagt
gtcttctgtcagatgagtgagaaagacgtgacctcgctggagccgtggctggtgaaggaa
atggacagttgcatctcaaccatctttctgcagcaggatgctggtgcctttgcgcagctt
tttaacctgatcgtcaacgagaacgtcagcgtggactacaggcacttcgaaacgagtgcc
acacctctgatggtggctgcagggagaggcttcatcacccagatggagcagctcttaagc
atgggggccaacgtgcaccttaaagcttctaatggctggactgctcttgactgggctaaa
caattcaaccagactgaagctgtagatctgctagagtcacacatttcgtctctggaggca
ggtcacttggacgagtcctccttggtgcagtcacacagcgaggagctcagcgctcaggac
caggagcttctcaaagcgtaccaccacagcttcgatgatgagaaggtggacctggatctc
atcatgcacctgctcttcaacatttgtcagagctctgatgaaggtgcagtcttgatattt
ttgccaggatacgatgagatcgttggactgcgagaccgcatccttttcgacgataaaaga
tttgcagatcatcagcagaggtaccaggtgttcacactacactccaacatgcagactgca
gatcagaggaaagttttgaaaccagctccatgcggggttcgcaaaattattctctcaact
aacattgctgaaacaagcatcaccgtcaacgatgtcgtctttgttatcgactctggcaag
gttaaagagaaagctttcgattccctaaatcatgtgaccatgctgaagatggtgtggata
tctaaagcaagtgcaatacagcgtaaaggaagagctggacgttgcaggccaggaatctgt
ttccatctgttcagtcggctgcgctacaataacatgctggagtatcaggtccctcagtta
ctgcgtatgcctctgcaggaactctgtcttcacactaaacttttggccccttttacctgc
tccattgctgagttccttgccaaagccccagagccaccacacctactcacagtcaagagc
gctgtgcagatgcttaagaccatagatgccatggacccatgggaggacctgaccaaactg
ggctaccacctagcagacctccctgtagagccacacctggggaagatggtgctatgtgca
gtggtgctgaagtgcctggacccgatcctcaccatcgcctgcatgctgtcctacagggaa
ccgttcgtgctaccatctcaggcgtcacaaaaacgagccgccatgctgtgcaggagatgc
ttttctgcaaacaccttcagtgatcacatggccttgctccgtgcttttcaggcatggcag
aaagcacgcagcgatggctgggagaggtctttctgtgagaagaactttctgtcacaggct
acaatggaaattatcatcaggatgcgcacccagctgcttggccaactccgtgccatagga
tttgttcgtgctcggggttgcaacgatatcagggatgtaaatctaaactctgaaaactgg
gcagtggtgaaggcagcactcgtatcgggcatgtaccctaacctgatcctcataaaccgt
gacaagcaaacactccgaggtgccaaagagaagaaggttcgcttccaccctgcatccatc
ctgagccaaccccaatacaagaagatccctccagctaactcccaagcagttgcagttcag
tctctgcctacagactggttgatctatgacgagatgacacgagcacacaggatagccagc
gtgcgctgctgtaccgcggtcactccgatcaccgtcgctgtgtttggaggttgtgccaaa
ctgcccagcacagcacttcaggaaccttctacgcctcatgtgttagacaatgctctgggt
gaggacagtgatagtgagaatgagacccgctccacagatcagctggctcagatgaagatc
gacgagtggcttaacttcaaactggatcaggagatggcatctatggtgttccagctgagg
cagcgttggcatagcctgtttttaaggagaatacaatgcccttcgaagccatggtcccag
ctggatgaggcgacgatccgggccgtggtgtcggtgctgagtagtgaagagcaagcagct
ggcctgcagcagcccacaggtatcggccagagacccaaacccataagctcagaggagcct
cagcatcagttaaacagcagtaagggtaacagacacaggagtggcgtggagcagagctat
gaggctcccacaccagatagatctccaaaagtgccgactgccgtctctcaggctaagagc
caaagagataaaggtgctgccttttccaaacgttcagctgatgaccatctcccagtaaag
tcagacagccccagcttgtccagtcctagcgtcagtccctcatccacttcctcagcaaaa
gaaccggctgctcgtatgtcacctttaactggggtttccaagtcaccatcgccaaggtcc
agaccttcagtgcgttacttcatcatgaagagcagcaacatgaggaacatcgagctctcc
cagcagaggagcatctggtcaactacacccaacaacgagcacaaactaaaccgagccttc
caggagagcagcactgtcttccttatcttctccgtgcaaggctccggacacttccagggt
tacgctcggatgagttcagagatcggttcagagcgctgtaaggactggggtgctaccgga
ctgggaggagtcttcagtgtggaatggatccataaagagagtctctcttttcaattcact
caccaactcctcaatccctggaatgaaaataagaaagtgcagatcagccgagacggacag
gagctggagcctcaggctgcagcacagctgttacaactctggaattccttctccaacaaa
cagcagcacgagccgtga
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integrated database retrieval system
