Tachysurus vachellii: 132841059
Help
Entry
132841059 CDS
T09596
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
tvc
Tachysurus vachellii
Pathway
tvc04270
Vascular smooth muscle contraction
tvc04625
C-type lectin receptor signaling pathway
tvc04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
132841059 (arhgef12b)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
132841059 (arhgef12b)
09153 Circulatory system
04270 Vascular smooth muscle contraction
132841059 (arhgef12b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tvc04131
]
132841059 (arhgef12b)
Membrane trafficking [BR:
tvc04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
132841059 (arhgef12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
132841059
NCBI-ProteinID:
XP_060719214
LinkDB
All DBs
Position
26:complement(4064449..4118972)
Genome browser
AA seq
1461 aa
AA seq
DB search
MSGSQSTIADRFPKKPTRPGSVLNKDHPPDKKPKSEKVSVPPTHDFDPTELPVQSVERRP
ESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNGTLVT
HSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLSEGEGDREPLSCLSSPHSPIPSVPERS
SSSSTSPSDRITSSLPAWAMKEEYSRNPTARLLKDMQEAQKHIPLLQGQLSKAAIAGQDG
LLTLRLGEVDADEGGLGDVDASPSWHSDSESPMNSNSTPVTPSMIPESPYQRDTPCHSPK
STPRVSLNSCPSPDGEDVVDLDSNYQSGVGSPSFRLPRPIIGAEDDDFDTEQEQMNGQCS
CFQTIELLKSRPAHLAAFLHHVVSQFDPAPLLCYLYAELYKQSNPKETRRTYSELHSTFI
DRSAQLKVLVPDSIAADMDRWKPDVIPEDVLRQHVQQLQDTLLPDIQKHLEDFRQKRSMG
LTLAEAELSRLDTERVRDRVALERERSCSEHIISKINEVLLTPSATEEEKCTAMQFVIQA
YMKHLGVKVKESRGFEPKPKLINLLPKIKKTIKAEKDGGVEEKLKKSRFQLMRSHNKRPS
RTDVSSVTKALEQNKQRTQKQPSQIPVGSSDQAETPSAGRTRSSQSSEGPDSSTGSISSP
SFSATLLHNSDSTVRDLEPGASPLSALPRLGEVGPLGEGQDSSSSGTHFDFTGPLDHLQE
EEPETDRNPDGGTPRPIRRMEPLGSGEVQSEDDQAFEVEPEQDPPHWQTLVSTDVLALLP
PHEIKRQEVINELFYTERAHLRMLKVLDNVFYQRMTREAILPPADIKNIFTNLDEIVQLH
VSITEQMTTVRKKNETAVVDLIGDDLLSWFSGAEEEKIKRAVGTFCSNQPFALELIKSRQ
KKDQRFAAFVQEAESNRQCRRLQLKDIIPVEMQRLTKYPLLLENIAKYTDDTEEKSKVKR
ACECCRQILNHVNQEVKEAENKQRLEDYQRRLDLSSLKQSEYPMIAEFKNLNLTKRKMVH
EGPLSWKVNKDKTIELYTLLLEDILVLLQRQDEKLILKCHSKNLAGTAETKHIFSPVIKL
STVLVRSVATDNKSFFVVSMSDYGAQIYELMAQTVSEQKTWHDLIGQRADCMKSLPQNDG
EREGDDELTSGMTKMNKDPDRISTGSIQSPEKDATSCSEILQIPPAGSNPFDTKSEDEGE
AEGEVEAEGEGETEGEVERSLQVLDEEEEEEEAFLEPELAERLPFLKQGSRHAIAVEEKD
LDSFDLPPLMADEALRTLATLRQLLINHMDRQEDVDRDRERGDALLREPRAGSLQGLEEN
FAPSNSVENGAERTETLHTRTENRHELPSGDTGFFETSEDFVGMVLEGYGGSGESSTDDD
GQVCSTEPAAAGDSGIDLKKLLSSASSQSRGPNFSRQVMTHLRLLQASLQQLKDVESKYN
QLCQRHSEQAATDSEENKDKS
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgagcggctcacagtccacgatagctgacaggtttcccaaaaaaccaaccagaccagga
agtgttctcaacaaggaccaccccccagacaagaagcccaagagcgagaaggtgtcagtg
cctccgacgcatgactttgaccccacagagttgcccgtgcagagtgttgagcgaaggccc
gagtcgtgtgggcttgttcagcggtgtgtgatcatccagaaagatgagaatggctttggg
ttgaccgtcagtggcgataacccagtgtttgtccagctggttaaagaagatggagctgct
atgcgagctggtgttcagacgggtgatagaattattaaggtcaacgggacgttagtaaca
cattccaatcatgtagaagtcgtcaagttaataaaatcgggttcgtacgtggctctgacg
gtgttggggagacctccagggctgccacagatccccttatcagagggagagggagacaga
gagcctctctcatgcctcagctcccctcactcccccatccccagtgtacccgagcgctcg
tcctcttcctcaacctctccctccgaccgcatcacctcctcactgcctgcatgggcgatg
aaggaggagtacagcagaaaccctacagccagactactgaaggacatgcaggaagcccag
aaacacatccctctgcttcagggccaactcagtaaagctgccatagctggacaggatggc
ctgcttactctgagacttggagaagttgatgcagatgaaggaggtttaggcgacgtggac
gcatctccatcctggcactcagactccgagtcccccatgaacagcaactcgacgccggtc
acgcccagtatgatcccagaaagcccgtaccaaagagacactccgtgccacagtccaaag
tcgacgccgcgcgtcagcctcaactcctgcccgtctccagacggcgaggatgtggtcgac
ctggactcgaactatcagagcggcgtgggaagcccgtcgttccgtctgccgcgtcccatc
atcggagccgaggacgatgacttcgacaccgagcaggagcagatgaacggccagtgtagc
tgcttccagaccatagagctgttgaagtctcggcctgctcacctcgcagccttcctgcat
cacgtggtctcgcagtttgaccctgcacctctgctgtgctacctctacgccgagctctac
aagcaaagcaaccccaaagagacacggcggacatacagcgagctccactccacgttcata
gaccgatcggcgcaactgaaagtactggtgccagactcgatcgcagctgacatggatcga
tggaagcctgacgtaattccagaagatgttctaaggcaacatgtgcaacagctacaggac
acactcctacctgacatccagaaacacctggaagacttcaggcagaagcgcagtatgggc
ctgactttggctgaggccgagcttagccgactcgacactgagcgagtgcgagaccgtgtg
gctctggagagagagcgctcgtgctcagagcacatcatctccaagatcaatgaagttttg
ttgacgccatcagccacagaggaggagaagtgtactgcaatgcagttcgtcattcaggcc
tacatgaagcaccttggggtgaaggtgaaggaatctcggggttttgagcccaaacccaag
ctgataaacttactccctaaaatcaagaagactataaaagcagagaaagacggaggcgtg
gaggagaagctgaaaaagtcccgcttccagctaatgcgcagccacaacaagaggccgagc
cgaacagacgtctcatcggttaccaaggctttagagcagaataaacagcggacacaaaag
cagccgtcacagattcccgtagggtcgagcgatcaggctgaaacaccttcagcaggacga
acacggagcagtcagtccagtgaaggaccagacagcagcacgggctccatcagctcacct
tctttcagtgctacgcttttacacaactctgacagcacggtgcgagacctagagccaggt
gcttctcccttgtcagcgttacccagactcggagaagtcggccctctgggtgaaggacag
gactcctcttcctcaggaacgcactttgacttcaccggtcctctggaccatctccaagag
gaggagcctgagacagacaggaatcctgacggagggacgccgcggccgatcagaaggatg
gagccgttgggttcaggagaggtgcagagcgaggacgatcaggcgtttgaggtggaacca
gagcaggatcctcctcactggcagacgctggtgagcacagatgttctcgcactgctgcca
ccacatgagatcaagagacaggaagtcatcaatgagctgttctacacggagcgcgctcac
ttgcgcatgctcaaggtgctggataacgttttctaccagaggatgacccgagaggccatt
ctaccccccgcagacatcaagaacatcttcaccaacctggatgagatcgtccagctacac
gtgtccatcacggagcaaatgacaaccgtccggaagaagaacgagacggcggtcgtggac
ctcataggagacgatttgctgtcctggttcagcggagcagaagaagagaagatcaaacgg
gccgtgggaaccttctgcagtaaccagccctttgctctggagcttataaagagcaggcag
aaaaaggatcaaagattcgcagcctttgtgcaggaggcagagagtaatcgtcagtgccga
aggctccagctgaaggacatcattcctgtggaaatgcagagactcaccaaatacccactc
ctgctcgaaaacattgcgaaatacactgacgacactgaggagaaaagcaaagtgaagcga
gcctgcgagtgttgccgtcagatcctcaaccacgtcaaccaggaagtaaaagaagctgaa
aacaagcagaggttagaggactaccagagaagactggatctgtcgtccctgaagcagagc
gagtaccccatgatcgcggagtttaagaacctcaacttgaccaaacggaaaatggtgcac
gagggaccactgtcttggaaagtcaataaagataagactattgagctctacacactcctc
ttagaggacatcttggtgctgctgcagaggcaggacgagaagctgatcctgaagtgccac
agtaagaacctggcaggcacggccgagaccaaacacatcttcagtccggtcattaagctg
agcaccgtactggtgcgctctgtagccacagataacaagtcgttctttgtggtgtccatg
tccgattacggcgcacagatctatgagctgatggcgcagaccgtgtctgagcagaaaacg
tggcacgacctgatcgggcaaagagcagactgtatgaagagcctgcctcagaacgatggg
gagcgagaaggtgatgacgagttgacctccggcatgacgaaaatgaacaaagatccagat
cgtatctctaccggaagcatccagtctccagaaaaagatgccacttcctgctcggagatc
ctgcagattcctccagcaggtagcaacccgtttgacacaaagtcagaggatgaaggagag
gcagagggagaggtagaggcagagggagagggagagacagaaggagaagttgagcgctcg
ctgcaggttctggatgaagaggaggaagaggaggaggccttcctcgaacctgagcttgca
gaaagacttccgttcttgaagcagggttcgaggcatgccatcgctgtggaggagaaagac
ttggactcctttgacctgcccccgctgatggcagacgaggcacttcgtaccttggctact
ctgaggcagctcctgatcaaccacatggacagacaagaggacgtggacagggacagagag
aggggggacgctctgctgcgtgagccgagggcagggtctttgcagggcttggaggaaaac
tttgcccccagtaactcagtggagaacggagctgagaggacagagaccctacacaccagg
acggagaaccgtcacgagctgccctcaggagatacaggcttctttgaaacctcagaggac
tttgtaggcatggtgttggagggttatggtgggtcaggtgagagcagcactgatgacgac
gggcaggtctgcagcacagagcctgcagcagcaggagactcgggcatagacctgaagaag
ctcctgtcttcggcttcctctcagagcagaggacccaacttcagcagacaggtcatgacc
catttacgcttgcttcaggccagcctgcagcagctgaaggacgtagaatcaaaatataac
caactatgccaaaggcactcggagcaagcagctactgattcagaagaaaacaaagataaa
agctag
DBGET
integrated database retrieval system
