KEGG   Tachysurus vachellii: 132841535
Entry
132841535         CDS       T09596                                 
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b
  KO
K06236  collagen type I alpha
Organism
tvc  Tachysurus vachellii
Pathway
tvc04510  Focal adhesion
tvc04512  ECM-receptor interaction
tvc04518  Integrin signaling
tvc04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tvc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    132841535 (col1a1b)
   04518 Integrin signaling
    132841535 (col1a1b)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    132841535 (col1a1b)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    132841535 (col1a1b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:tvc00536]
    132841535 (col1a1b)
Glycosaminoglycan binding proteins [BR:tvc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   132841535 (col1a1b)
SSDB
Motif
Pfam: Collagen COLFI VWC VWC2L_2nd
Other DBs
NCBI-GeneID: 132841535
NCBI-ProteinID: XP_060719869
LinkDB
Position
2:23457216..23476319
AA seq 1446 aa
MFSFVDIRLGLLLAAAVLVARGQGEDDSIFNSCTLEGQLYNDKDVWKPEPCRICVCDSGT
VMCDEVICEDITDCANPEIPDGECCPICIDGTESPETSGPSGPRGEPGPKGEPGPVGHPG
NDGIPGENGLPGPPGPPGPPGLGGYNLPQLSYGSEKSSGPAVPGPPGPMGPRGPPGSAGS
PGPQGFTGPPGEPGEPGSPGPMGPRGSPGPPGKNGDDGEAGKPGRPGERGAAGAQGARGF
PGTPGLPGIKGHRGFPGLDGAKGDSGPAGPKGEPGSPGENGVAGVMGPRGLPGERGRPGP
AGPSGARGNDGNSGPAGSPGPTGPSGPPGFPGAAGAKGETGPAGGRGSEGPQGARGEPGN
PGPAGAAGPPGPPGTDGSAGSKGSPGPAGITGAPGFPGTRGPAGPAGPLGAVGPKGLNGD
AGAPGSKGEPGPKGEPGPVGPQGLSGPPGDEGKRGARGEPGGPGPLGPPGARGAPGNRGF
PGAEGGPGPKATPGELGPNGPAGAQGATGESGRPGEPGLPGSKGVTGSPGAPGPDGKTGP
AGASGQDGASGPPGPAGSRGLPGVMGFPGPKGTDGEPGKPGERGVEGPTGSVGAPGKDGD
VGAPGPSGPAGPSGEKGEQGPAGGPGFQGLPGPQGSTGETGKAGEQGLPGEVGVHGPPGP
RGDRGLPGERGTPGSAGPTGSRGSPGSPGNDGARGDPGAAGAPGGVGAAGPQGMPGERGS
SGLPGARGDRGDGGPKGPDGAPGKDGVRGLTGAIGSPGPSGTSGEKGEPGPVGPPGSTGP
RGGPGDRGEPGSPGPAGFAGPPGAAGQPGAKGEQGDSGPKGDAGAPGSPGPVGPAGHQGP
PGATGPKGARGGAGPPGATGFPGAAGRVGPPGPAGVGGPPGPVGPGGKEGQRGARGEKGA
PGRPGEVGGVGPPGPPGERGSAGADGPAGPAGAPGPQGINGGGGIAGSPGQRGERGMPGP
SGPSGEPGKQGVTGAAGERGPPGPMGPPGLSGGPGEAGREGSTGHDGAPGRDGAPGPKGD
RGESGHPGAPGAPGPPGPPGPVGASGKPGDRGETGPAGPAGVSGPAGARGALGPAGPRGD
KGEAGETGERGMKGHRGFGGMSGLPGPAGHPGEPGPAGPTGPAGPRGPAGSTGAHGKDGM
NGIPGPVGPPGPRGRTGEMGAAGAPGLPGPPGPPGPAGIGEPFPIMPQPEKAADPFHGYR
ADEASVQDRDAEVDSSLKTISQKIENILSPEGTKTNPARMCRDLRMCHPEWKSGSYWVDP
NQGSPLDAIKVFCNMETGETCVNPTRASIPLKNWYISKNIREKKHVWFGESMPDGFQFQY
GSEGADSEDVSIQMTFMRLMSNKASQNITYHCKNSIAYMDETSGNLKKALLLQGSNDAEI
RAEGNSRSTYTVTEDGCTSHTGTWGKTVIEYKTTKTTRLPIIDIAPMDIGAPNQEFGIEV
GPVCFL
NT seq 4341 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggatatccggttagggttgttgctcgcggccgcggttctcgtggcg
agaggacaaggcgaggatgacagcatattcaatagctgcacattagaaggccagttgtac
aatgacaaggacgtatggaaacctgagccatgccggatttgcgtgtgcgacagcggcact
gtcatgtgcgacgaggtgatctgcgaggacataacggactgcgccaacccagaaatcccc
gatggcgaatgctgccctatttgcatcgacggcaccgaatctccagagacctctgggcct
tctggacccaggggtgagcccggacctaagggtgaaccgggtcccgtcggacatcccggc
aacgacggcattcccggagagaacggacttcctggacctcccggccctcctggaccccct
ggtttgggtggatataacttgccccagctgtcttatggtagtgagaaatccagcggccca
gctgttcctggaccaccaggaccaatgggaccccgtggacctcctggatctgcaggttct
cctggtcctcaaggattcactggtcctccaggtgaacctggtgagcctggctctcctggt
ccgatgggtcctcgtggttcccctggacctcctggaaagaacggagatgatggtgaggct
ggcaaacctggtcgccccggtgagcgtggtgccgctggtgctcagggagctcgcggtttc
cctggaaccccaggacttcctggaatcaagggacacagaggtttccctggtctagatgga
gctaagggagattctggccctgctggacctaagggagagcctggttcccctggtgagaac
ggtgttgctggtgttatgggccctcgtggtctgcctggtgagagaggacgtcctggacct
gctggaccttctggggctcgtggtaacgatggcaactctggacctgctggatctcctgga
cccactggtccttctggtcctcctggattccctggagctgctggagctaagggagagacc
ggccctgctggaggccgtggctcagagggacctcagggagcccgtggtgagcctggtaac
cctggacctgctggagctgctggacccccaggtcctccaggtactgatggtagcgctggt
agcaagggttctcctggtcctgctggtattactggcgcccctggtttccctggtactcgt
ggacctgctggacctgctggccctctcggagctgttggacctaagggtctcaacggtgat
gctggtgccccaggaagcaaaggagagcctggtccaaagggagagcctggaccagttgga
cctcagggtctttctggacctcctggtgatgagggtaagagaggagctcgtggtgagcct
ggtggtcctggacctcttggacctcctggagctcgtggtgcccctggcaatcgtggtttc
cctggtgctgaaggtggaccaggccccaaggcaacccctggtgagcttggacccaacgga
cctgctggagctcagggagccaccggagagtctggacgacctggagagcctggacttcct
ggatccaagggtgtgactggttcccctggtgctcctggacctgatggcaaaactggacct
gctggtgcttctggtcaggatggtgcttctgggcctcccggccctgctggatctcgtggt
cttcctggtgtgatgggattccctggacctaagggaactgatggtgagcctggtaagcct
ggtgagagaggagttgaaggacccactggttctgtgggtgcccctggaaaagatggtgat
gttggtgctcctggacctagtggacctgctggaccttctggagagaaaggagaacaagga
cctgctggaggtcctggattccagggtcttcctggacctcagggtagtactggcgagact
ggcaaggctggtgagcagggcttgcctggtgaggttggtgttcatggacctcctggtccc
agaggtgatagaggtcttcctggtgagcgtggtaccccaggctctgctggccccaccggc
tctcgtggctctcctggaagtcctggtaacgatggtgctaggggagatcctggtgctgct
ggagctcctggtggtgtgggtgctgctggtccacagggaatgcccggagagcgtggttct
agcggacttccaggcgcaagaggagatagaggagatggtggacctaagggccctgatggt
gctcctggtaaggatggtgtgcgtggtttgactggtgcaattggttcccctggaccttct
ggtacttctggagaaaagggtgagcctggacccgtaggaccacctggatctactggacct
cgtggtggacctggtgaccgtggtgagcccggatctcctggacctgctggatttgctgga
cctcctggtgcagctggtcagcctggagccaagggtgagcaaggtgactctggacctaaa
ggtgatgctggagctcctggatctcccggacctgtcggtcctgccggtcatcagggccca
cctggtgctactggacccaaaggtgctcgtggtggtgctggaccccctggtgccactgga
ttccctggtgctgctggtagagttggacctcctggccctgctggtgttggtggacctcct
ggtcccgttggcccaggtggtaaagagggacagcgtggtgcccgtggtgagaagggagca
cctggtcgccctggtgaggttggtggtgttggacccccaggacctcccggagagagaggg
tctgccggtgccgacggacctgccggtcccgctggtgcccctggacctcagggtataaat
ggaggcggtggtattgctggtagccctggacaaagaggagagagaggcatgccaggtcct
tctggcccatctggagagccaggaaaacagggtgttactggtgcagcaggtgagcgtgga
cctcctggcccaatgggaccccctggtctgagcggaggtcccggtgaagctggccgtgag
ggtagcactggtcatgatggtgcccctggccgtgatggtgctcctggccccaagggagac
cgtggtgagtctggacatcctggagctccaggagctcctggaccccctggacctcctgga
cctgttggagcatctggcaagcctggagatcgtggagagactggtcctgctggtcctgcc
ggtgtttcaggtcccgctggtgcacgtggtgccctgggccctgctggtcctcgtggagac
aaaggtgaggctggagagacaggagaaagaggcatgaagggacaccgtggcttcggtggc
atgtctggattgcctggacctgctggccatcctggtgagccaggacctgctggacctact
ggccctgctggacctcgtggacctgctggctctactggtgctcatggtaaggatggtatg
aatggtattcctggacctgttggacctcctggacctcgtggacggactggagagatggga
gctgctggtgcccctggtcttcccgggcccccaggtcctcctggtcctgcaggcattggt
gagccattccccatcatgccccagcctgagaaggcagctgacccattccatggctacaga
gctgatgaagctagtgtgcaggaccgtgatgctgaggtagactcctccctcaagactatc
agccagaagatcgagaacatcctcagcccagagggaaccaagacaaacccagcacgcatg
tgccgtgacctcaggatgtgtcatcctgagtggaagagcggttcttactgggtggatccc
aaccagggatctcctctggatgccatcaaggtcttctgcaacatggagactggtgagacc
tgcgtcaacccgactcgtgccagcattcctctgaagaactggtacatcagcaagaacatc
cgtgagaagaagcacgtctggtttggagagtccatgcctgatggcttccagttccagtac
ggcagcgagggtgcagactctgaggatgtgagcatccagatgaccttcatgcgcctgatg
tccaacaaggcatctcagaacatcacataccactgcaagaacagcattgcctacatggac
gagacctcgggcaacctgaagaaggctctgctcctgcagggatccaacgatgccgagatc
agggccgagggcaacagtcgttccacgtatacagtcaccgaggacggctgcacgtcgcac
actggcacttggggcaagacagtcatcgaatacaaaacaacgaaaacaactcgtcttccc
atcattgacattgctcctatggacattggtgctcccaatcaggaattcggcatagaagtt
ggcccagtctgcttcttgtaa

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