KEGG   Tachysurus vachellii: 132841648
Entry
132841648         CDS       T09596                                 
Symbol
smu1b
Name
(RefSeq) WD40 repeat-containing protein SMU1 isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
tvc  Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:tvc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tvc03041]
    132841648 (smu1b)
Spliceosome [BR:tvc03041]
 Complex B
  Other components
   Complex B specific factors
    132841648 (smu1b)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WDR55 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd EIF3I WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_ACSF4 Beta-prop_WDR90_POC16_2nd LisH_TPL WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_RIG_2nd Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_Nup120_160 Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_TEP1_C Beta-prop_DCAF4 Ge1_WD40 Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_DCAF12 Beta-prop_NOL10_N Beta-prop_IP5PC_F Beta-prop_NUP159_NUP214 WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_LRRK2 Beta-prop_WDR75_2nd VPS8_N LisH_PAC1 LisH_WDR26 LisH DGF-1_beta-sheet
Other DBs
NCBI-GeneID: 132841648
NCBI-ProteinID: XP_060720049
LinkDB
Position
2:26390646..26403631
AA seq 539 aa
MEMEVESADSVIRLIMQYLKENNLPRTLATLQEESTVVLNTIDSIESFMEDVNSGRWDAV
LRAIQHLKLPDKLLIDLYEQVVLELIELKELGAATCLLTQTDPMIMLKHTQPERYTKLEA
LLSNKFDPNEVYPGGSSKEKRRLDIAQALVGEVSVVPPSRLMALLGQGRLCESALYRLQE
TKALRQFGSLAMLSLKWQQHQGLLPPGMSIDLFRGKTMMKDLEEERFPTQLSHLLKFGPK
SHVECARFTPDGQYLITGSVDGFIEVWDFTTGKICKDLKYQAQDNFMMMGEAVLCLAVSH
DSEMVVSGAQDGKIQLWRIRNGQCLRKFERPHGKAVTCLCFSRDNSRLLSGSFDQIIRLH
GLKSGKMLKELQGHTSCINDVIFSHNGQFAISASADGTVKIWNVNTAECTITIKTPDVPE
GSDITVNNVVLVPKNPEHFVVCNRTSTVVVMNVQGQVLRSFSSGVREGGDFVCCTLSPRG
EWIYCVGEDYVLYSFSTITGKLERTLTVHEKDVIGVTHHPHQNLIATYSEDGLLKLWKP
NT seq 1620 nt   +upstreamnt  +downstreamnt
atggagatggaggtggaatcagccgacagtgtgatccggctgatcatgcagtacctgaag
gagaacaatctgccacgcacactggccacgctgcaggaggagagtacggtggtgttgaac
acaatcgacagcatcgagagcttcatggaggacgtgaacagcggccggtgggatgcagtg
ctgcgagccatccaacacctcaaactacctgacaagctgctcatcgacctgtacgaacag
gtcgtactggagctgattgagctgaaagaactcggagccgccacttgtttactgactcag
acggaccccatgatcatgctgaaacacactcagcctgaacgatacaccaagctggaggct
ctgctctcaaacaagttcgaccccaacgaggtttacccaggaggcagcagtaaagagaag
cgcaggttggacatcgctcaggctctggttggagaagtcagcgtggttcctccatctcgt
ctcatggctctgctcggacagggccgtttatgtgagagcgccctgtacaggttacaggag
accaaagcgctgaggcagttcggatcattagccatgttgtctctgaagtggcagcagcac
cagggtctcctgccccctgggatgtccatagacctgttccggggcaagaccatgatgaag
gacctggaggaagagcgcttccccacacagctcagtcacctcctaaagtttggccctaag
tcacatgtggaatgcgctcggttcacaccagatggtcagtatctgattacaggatcagtg
gatggatttatcgaggtttgggatttcaccacagggaaaatctgcaaggatttaaagtac
caagctcaggataacttcatgatgatgggtgaggcggttctctgcctggcagtgagtcac
gacagtgagatggtggtgtccggggctcaggacgggaaaatacagctgtggaggattcgt
aacggtcagtgtctgcgcaaattcgaacgtccccatgggaaagcggtcacctgcctctgc
ttcagcagagacaacagtcggctcctcagtggctccttcgaccagatcatcagacttcat
ggactgaaatcaggaaagatgctgaaggagctccaaggtcacacgtcctgcataaacgac
gtcatcttctcgcacaacggccagtttgccattagcgcctcagcagatggcacagtgaag
atctggaacgttaacacagcagaatgcaccatcaccatcaaaactcctgacgttccagaa
ggatccgacatcacagtgaacaatgttgtcctggtgcccaaaaacccagagcactttgtg
gtgtgtaacaggaccagcacagtggtggtcatgaatgtccagggccaggtactgaggagt
tttagctcaggagtgagggagggaggagactttgtgtgttgcaccttgtctcctcgtgga
gagtggatctactgcgtgggagaagattacgtgctttactcgttcagcaccatcactggg
aagctggagagaactctgacggtgcatgagaaagacgtgattggcgtaacgcaccaccct
catcagaacctcatcgccacctacagcgaggacggcctgctgaagctctggaaaccgtga

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