Tachysurus vachellii: 132841690
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Entry
132841690 CDS
T09596
Symbol
ccdc88ab
Name
(RefSeq) girdin isoform X1
KO
K25392
girdin
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tvc03037
]
132841690 (ccdc88ab)
Cilium and associated proteins [BR:
tvc03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
132841690 (ccdc88ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HOOK_N
GAS
Rod_CreS
DUF4472
KASH_CCD
ERM_helical
Motif
Other DBs
NCBI-GeneID:
132841690
NCBI-ProteinID:
XP_060720124
LinkDB
All DBs
Position
2:complement(28115555..28164294)
Genome browser
AA seq
1884 aa
AA seq
DB search
MEKMDSEVFTPQLEQFLLTPLVAWVKTVVQPSLSDPSSLSLYMELVDGCYLNEVMLRINP
KASSQRVNKKVNNDAVLRVQNLSILIRHIKTYYQETLQQLVMMPLPNVLVLGRTPLTEQG
LAEVKKLLLLLLGCAVQCEEKEEYIERIQTLDFDTKAAIASHIQEVTHDQENVLDIQWLE
GGESPPEDLDSLSRNLAFHLRRLVDERDEQLETIVEMTQERDCGQCAPPPSLPPCAQSPG
DSPNMRRTESRQHLSVELADAKAKIRRLRQELEEKSEQLLDCRQELENLEKELKRIQQEN
QQLLSEARSARAYRDELDALREKAIRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQI
LLETKTMLEDQLEGSRARSDKLHELEKENLQFKAKIHDMEMERDMDRKRIEELLEENLTL
EMAQKQSMDESLHLGWELEQLSKTTPEVTEVPQKSLGHEVNELTSSRLLKLEMENQALLK
TVEELKGRGEAETRLLKAEKENQRLSLKLEQLENVAQSDRESLRSAETLSSDLMKEKSQL
QKTLETLRENLERQVKGLEQENKHLNQTIMSLRQRSQVSAEARVKDIEKENRVLHESIKE
TSGKLNKLEFERKQLRKDMEYYQEKAEKTEELETEVQRMERENEGLQKRVASLGITCEKV
DALEKENAELEAESRRLKKKIDGLRNASLQLEALEKENAQLEEENLELRRTAESLRSAGA
KAARLDQENRELESEKNQMQRNLELLKASSKKTERLELSYQGLDSENQRLQKALENSRRK
IQQLEGELQDLESENQSLQRSLEELKISSKRLEQLEKENKVLEQESSQLEKDKKQLEKEN
KRLRQQAEIRDSKLDEDGQRISQLEKENRVLSKEVSTLQDSYNRVKDLERDNKELVKQAT
IDKKTLATLREELVSEKLKSQQTINDLEKLTHELEKMGLNKEGLLHDEQSSAARFKLLES
KLESTLKSSLEIKEEKIAALEARLQESSNLNQQLRQELKTVKKNYEALRQREEEERMVNS
SPSRGGEDSQSVRKWEKESHEATRELLKVKDRLIEVERNNATLQAEKQALRTQLKQLETQ
SNNLQAQILALQRQAASLQENNTALQTQNAKLQVENSTLNSQSAALVAQNAQLQSQQCSA
ESERDGAVREREEQRSTYELLLRDYEKLTALHERQAAEYEALIGKHGGLKSAHKSLEVQH
RDLEDRYNQLLKQKAQLEELEKVLKAEQEKMLSENQSHQATAAEYHKLKEENDKLNTTYQ
QLLKDNEGLQADHKNLKSQLNAAKLEQTRLEAEFSKLKEQYQQLDITSTKLTNQCELLSQ
LKGNLEEENRHLLDQIQTLMLQNRTLLEQTMESKDLFHVEQRQYIDKLNELRRQKEKLEE
KIMDQYKFYDPSPPRRRGNWITLKMKKLIKPKSRERMRSLTLTPCRSESSDGFLTAPQDS
QDSSSMGSGSLDDPLSQKRSGTLKKLPFMRNRSKDKDKVKAIYRRSMSMNDLLQSMALAG
AGQWSGSTDHLEAPEDPVCAGGSQRMKELAYSTTAIDYTTLSNKHKLKNKDNVSCEDVTP
TSSDEQSGVRSQGALNGSVSRPQSESSGEFSLSLDAEVWSSESSPVQRSAQHSQRRRSSS
HANESGSQDNMSAESPRLTRASDPVQKERTKGRGILRSASGKATPTEPKAGRPSLRKAES
TRVKGPSQPRLGLSAQAKATSVCERLDASSSSSGLPRASSVISTAEGSTRRSSVHDMLAK
DAREPVSVDPSPSKSQAASSEYPKPLPKSASVPCTGRVPNADDPELSTLQEFLGPSFTVE
SVFLDSIFSEPAFSSSTRNQAFLSLNTSLVSNISGPPLKPKPNHSHNQQNDSKVDGRGKD
NNPDQSAPLSSEDSQSLWYEYGCV
NT seq
5655 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaatggacagcgaggtattcacacctcagcttgagcaatttctgctcactcct
ctggtggcatgggtgaaaacggtggtccagccaagcctgagcgacccaagcagtctttcc
ctgtacatggagttagtggatggttgctacctcaatgaggtcatgctgaggataaatccc
aaagcttccagccagagagtgaacaagaaagtgaacaatgacgcagtgttgcgtgtccag
aatctgtccatcctcatacgccacatcaaaacatactatcaggagaccctgcagcagctg
gtgatgatgcctttgcccaacgtgctggtgctcggcagaacgccgctcactgagcaaggc
ctggctgaggtgaagaaactgctcctgctgctgctcgggtgtgctgttcagtgcgaggaa
aaggaagagtacatcgagaggatccagacgctggattttgacacgaaagcggccatcgcg
tctcacattcaggaggtcactcatgatcaagagaatgttctggacatacagtggcttgaa
gggggagaatctccacctgaggatcttgactcgctttccagaaacctggctttccatctc
agacgcctggtggacgagagagatgagcagctggagacgatcgtggagatgacccaggag
agagactgcggtcagtgtgctcctcctccttctctgccaccctgcgcccagtcccctggt
gactcacccaacatgcggcgcaccgagagcaggcagcacctcagtgtggagctggcagac
gccaaggccaagatccgacgcctccgccaggagcttgaagagaaaagcgagcagttactg
gactgcaggcaggagctggagaacctggagaaagagctgaagaggatccagcaggagaac
cagcagctgctgtctgaggcgcgctctgcgagggcgtaccgcgacgagctggacgctctg
agggagaaggccatccgggtggacaagctggagagcgaagtgagccgttacaaagaaaga
ctccacgacattgagttttacaaagccagagtcgaggagctgaaggaggacaatcagatc
ctgctggagaccaagactatgttggaggaccagctggaaggctctagggctcgttcagat
aaactacacgagctcgagaaggagaatctgcagttcaaagccaaaatccatgacatggag
atggagcgagacatggacaggaagcgtatcgaggagctgctggaggagaacctgacgctg
gagatggctcagaaacagagcatggacgagtccctgcacctcggatgggagctggagcag
ctttccaaaaccacacccgaggtcactgaggttcctcagaagtctctgggccacgaggtg
aatgagctgacatccagccgcctcctgaagctagagatggagaaccaggcactactgaag
acggtggaggagctgaagggtcgcggtgaggccgaaacacgcctcctcaaggctgaaaag
gagaaccagagactcagcctgaagctggagcagctggagaacgtggcgcagtcagacagg
gagagtctgcgcagtgctgagaccctgagctcagacctgatgaaggagaaatctcagctg
cagaaaaccctggagactctgagggagaacctggagagacaggtgaaggggcttgagcag
gagaacaagcacttaaaccagaccatcatgtccctcaggcagcgctctcaggtcagtgct
gaagcccgggtcaaagacatagagaaggagaaccgcgtcctacacgagtccatcaaagag
accagcggcaagctcaacaagctcgagttcgagcgcaagcagctccgtaaagacatggag
tactaccaggagaaagctgagaagacagaagagcttgagacggaggtccagcgcatggaa
cgcgagaacgagggtctgcaaaaacgtgtggcaagcctcgggatcacctgcgagaaggtg
gacgccttggaaaaggagaacgctgaactggaggcagagagcagaaggttgaagaagaag
atcgatgggttgaggaacgcatccctgcagctggaagcattagagaaagagaatgcccag
ctggaagaggagaacctggaactgcggcgtacagctgagagtctgagatccgcgggagcc
aaagccgctcgactggaccaggagaaccgagagctggagagcgagaagaatcagatgcaa
agaaacctggagctgctgaaagcttcatccaagaaaaccgaacgccttgaactcagctac
caaggtctggactctgagaaccagcgactccagaaagctctggagaatagcaggcgtaaa
atccaacagctggaaggagagctccaggacctggagagcgagaaccagagccttcagaga
agcctggaggagctgaagatctccagcaagcgtctggagcaactggaaaaagagaacaaa
gtgctggagcaggagagctcacagctggagaaagacaagaagcagctggagaaggagaac
aagcgcctgagacagcaggctgaaatcagagactccaaactagacgaggatggtcagagg
atctcgcagctggagaaggaaaaccgtgtgctgagcaaggaagtcagcaccctgcaggac
tcctataaccgtgtcaaagatctcgagagggacaacaaggagctggtaaagcaagccacc
attgacaagaagacactggccacactccgagaggagctggtgagcgagaaactgaagagt
cagcaaacgattaacgatctggaaaaactgacacacgagctggagaagatgggcctgaat
aaagaaggactgcttcatgatgaacagagctctgctgcaaggttcaagctgctggagtcg
aagctggagtccacgctgaagtcctctctggagattaaagaggagaagatcgccgccctg
gaggccagattgcaggagtcttccaaccttaaccagcagcttcgacaggaactcaaaaca
gtgaagaagaactacgaggctcttcgtcagagggaagaggaggagcgcatggtgaacagc
tcgccctctagaggaggggaggactcacagagcgtcaggaaatgggaaaaggaaagtcat
gaagccactcgagagctgctgaaggtcaaagatcgactcatagaggtggagaggaacaat
gccactcttcaggcggagaagcaggcactgcgtacacagctgaagcagctggagactcag
agcaataacctccaggctcagatcctggcgctgcagagacaagcagcctcactgcaggag
aacaacacagcactacagactcagaacgctaaactccaggtggagaactcgacgctgaac
tctcagagcgcggcgctcgtagctcagaacgctcagctacagagtcagcagtgcagtgca
gagagcgagcgagacggcgcagtgcgggaacgtgaggagcagcgatccacctacgagctt
ctgctgagggattacgagaagctaacggctctgcacgagcgccaggcagccgagtacgaa
gctctgatcggcaaacacggagggttgaagagcgcacacaagagcctggaagtgcagcac
cgagacctggaggacaggtacaaccagctgctaaagcagaaggcacagctggaggagctg
gagaaggttttgaaggctgagcaggagaagatgttgtcagagaaccagagccaccaggcc
acagcggccgagtatcacaaactgaaggaagaaaacgacaagttgaacacgacgtaccaa
cagctgctgaaagataacgagggcctgcaagccgaccacaagaacctaaagagccagctg
aacgctgctaaactggagcagacgcgcctggaggccgagttctccaagctgaaagaacag
taccaacagctggatatcacctccaccaaactcaccaaccagtgtgagttgctgagtcag
ctgaaagggaatctggaagaagagaaccgtcacctgctggaccagatccagaccttgatg
ctgcagaaccggaccctgctggagcagaccatggagagcaaagacctgttccacgtggag
cagagacagtatatagacaaactaaacgagctgaggagacagaaggagaagttggaggag
aagatcatggatcagtataaattctatgacccctcaccccccaggagaaggggcaactgg
atcacgctgaagatgaagaagctgatcaagccgaagagccgcgagcgaatgcgttccctc
accctcacgccatgccgctctgagtccagcgacggcttcctgacggctcctcaggacagt
caagacagctcgtccatgggctctgggtcactcgacgaccctctgagtcaaaagaggagc
ggcacactgaaaaagctgccctttatgaggaacaggtccaaggacaaagacaaagtgaag
gccatctatcggcgctccatgtcaatgaacgatctactgcagtccatggcattagctggt
gctggtcagtggagcggaagtacggatcacctggaggcccctgaggacccggtgtgtgcg
ggtgggagccagagaatgaaggagctggcatactccacaacggctattgactacaccacc
ctcagcaacaagcacaagctcaagaacaaagataacgtctcctgcgaggacgtcactcca
acctcttcagatgagcagagtggcgttcgaagccaaggtgcgctgaacggcagcgtgagc
agacctcagagcgagagcagtggggagttcagcctcagtctggacgcagaggtttggtca
agcgaaagcagcccggtgcagaggtcagcgcaacacagccagaggaggaggagcagctct
cacgccaacgagtctggcagccaggacaacatgagcgcagaatctccacgtctaaccaga
gcgtctgatcctgtgcagaaggagcgcaccaaggggcggggaatcctgcggtctgccagc
ggaaaggccacgcccaccgagcccaaagcaggccgaccgagcctgcgtaaggccgagagc
actcgggtgaagggccccagtcagcccaggttaggcctgagtgctcaggcaaaagcaaca
tctgtgtgcgagcgcctggatgcctcgtcctcttcctccggtcttcctcgtgccagcagt
gtcatctccacagccgagggcagcacgcgccgatccagcgtccacgacatgctggccaag
gacgcacgcgagcctgtctctgtggatccgtcaccctcgaagagtcaggctgcatccagt
gagtacccaaaacccctgcccaaatcggccagcgtgccctgcaccggccgtgtcccaaac
gcagacgaccccgagctgtccactctgcaggagttcttgggcccctccttcaccgtagag
tccgtcttcctggactccatctttagcgagccagcgttttccagcagcaccaggaaccag
gccttcctctcactcaatacgtcactcgttagtaacatcagcggcccgcccctcaaaccc
aaacccaatcacagtcacaatcagcagaacgacagcaaggtagatgggcggggcaaagat
aataatcctgaccaatccgctcccttgagttcagaggacagccaatcgctctggtacgaa
tacggctgtgtgtaa
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integrated database retrieval system
