Tachysurus vachellii: 132842005
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Entry
132842005 CDS
T09596
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
tvc
Tachysurus vachellii
Pathway
tvc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132842005 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132842005 (fip1l1b)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
132842005 (fip1l1b)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
132842005
NCBI-ProteinID:
XP_060720670
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Position
2:complement(39994542..40004370)
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AA seq
553 aa
AA seq
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MSAEEADKTITPAEPPVGDEEEEWLYGDEGEAKEAEEEEAKLTAAVSAPPAPAAPEEEST
GNGVTSQEEAQGDNEDSESDSDDDDDDVRVTIGDIKTGAPQYTSYGAAPVNLNIKTGGSR
PYGAVGAKVKGVDLEAPGSINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGFNEETWKA
YCEKQKRLRMGLDSIAISSVTSKISVQQGRTGNDKEAALPVHVAKTDFTSPSTLYKTGLN
PARISPPQWAGPASQDTLYYTKTTGTIDVIGGQTATISRVEGRRRHNLEGNNIQVISEHT
STEAEATPAKLPTFFPPGPLPPNMPPPPFLPPPPVSQAPPLIPPPRVPITVPPPGFPPPP
SGPPPNLMPTLDNSGHPGGYDCRPVTPYPFPPGAYPPPLQGPVNNWPGMIDNTKQWDYYP
RREKEREKERERERTRDRGHEREREREREHSPTSMAYNSDEERYRYRDYGDRGYERHRDR
SSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDGHRRHKHKKSKRSKEGKEPSE
ERAADQENQEAME
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcggaagaagcagataaaacaataacaccggcggagcctcctgtgggggatgag
gaggaggagtggctctatggtgatgaaggagaggcaaaagaggccgaggaagaagaggcc
aaactcacagccgctgtcagtgccccccctgctcctgcagccccagaggaggagagcact
ggaaatggagtgacgagtcaggaggaggcgcagggtgacaacgaggacagcgagagtgac
agcgatgatgacgacgacgacgttcgtgttaccatcggtgacattaagacaggcgcgcct
cagtacacgtcttacggagctgcgccggttaatctgaacataaagacaggtggcagcagg
ccgtatggagcagtgggagcgaaggtgaaaggtgtggatctggaggctccaggcagcatc
aatggggtccctgtgctggaggtggacatggagtcctttgaggaaaagccctggagaaaa
cctggtgctgacttgtcggactactttaattatggctttaatgaggaaacctggaaggcg
tactgtgagaaacagaagcggctgcggatgggcctagactccatcgccatcagctctgtt
accagcaagatttctgttcagcagggcaggacggggaacgataaagaggctgcacttcct
gttcatgtcgctaaaactgactttacctccccatcgaccctgtacaagaccggcctaaac
ccggccaggatatcccctccacagtgggcggggcctgcatcccaagacacgctctattat
acgaagactactgggaccattgatgtgattggtggacaaacagccaccatcagcagggtg
gagggacgacgccgacacaatctggagggaaacaacatccaggtgatctctgaacacacc
tccactgaagctgaggccacgcctgccaaactccctacattcttccccccagggcccctc
cctcccaacatgccaccacctccattcctgcctccgccccctgttagccaagctccacct
cttattcctccaccaagagtcccgatcaccgtccctcctcctggtttcccgcctcctccc
agtggcccgccccctaacctcatgccaaccttagacaacagtggacatccaggaggatac
gactgccgtcctgtcactccatatcctttcccaccaggggcttacccaccacccttgcag
gggcctgtgaacaactggcccgggatgatagacaacacgaagcagtgggattattacccc
cgccgagagaaagagcgagagaaggagagagagagggagaggacgcgggaccgaggacac
gaacgggagagagagagagagcgagagcatagtcctacgtccatggcctacaacagtgat
gaggagcgctaccgttaccgtgactacggagaccgtgggtacgagcgtcatcgggaccgg
tcgagccgagagaaagaggagagacaccgtgagaggagacacagagagaaagaggaggga
aggcataagtcctcacgcagcagtagcagaaggaggcacgacagtgaggaaggagacggc
catcgcaggcacaaacataagaagtctaagaggagtaaagaaggcaaagagccgagcgag
gagcgagcagctgaccaggagaaccaggaggccatggagtaa
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