Tachysurus vachellii: 132842035
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Entry
132842035 CDS
T09596
Symbol
pcdh18a
Name
(RefSeq) protocadherin-18a isoform X1
KO
K16499
protocadherin delta 2
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tvc04515
]
132842035 (pcdh18a)
Cell adhesion molecules [BR:
tvc04515
]
Cadherins
Protocadherins
132842035 (pcdh18a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
132842035
NCBI-ProteinID:
XP_060720721
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All DBs
Position
2:complement(40666789..40673894)
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AA seq
1058 aa
AA seq
DB search
MWNFTTRRETMHSACLVLFTLLVSGFGLVVGRTLRYRVYEEQEAGTVIGSLKEDARDVLS
HLPNTVPLRFRSVQRGGASALAVRERDGEISVRGRLDREKLCDRNPNCSVEFDVLTLPTE
HLQLFHVQVEILDVNDHAPRFPRAVIPLEISETASVGTRVPLDSAADPDVGENALSTYTL
SASDTFGIDVLTGTNGAKYAELVVLKELDRETRSSYELRLTASDGGSPPRTGTTLLKIKV
ADSNDNNPIFAEPSYTIDLPEDAAPGVLLVDLNATDADEGTNGKIVYSFSSHVSPKVVET
FRIDPDTGHLSLLRKVDFETDDSYDVDVQAQDSGPNSMPAHCKITIKVKDVNDNNPEVSV
SLMGNDEEAALVSELAPIDTFVALVRVDDADSGLNGEVVCRLAREGHFRLQKTHEKNYVI
LTNATLDRETSSEYSLTIIAEDRGTPSLSTVRHFTVRVQDENDNAPHFDKNRYDIFKDEN
NSPGAYLATVHATDPDLATNGHVSYSVLEGMVHGSSISTYVTVDPSSGAIYALRTFDYEE
ISHISFMIQARDYGNPSLSSNVTVVLNVLDVNDNRPVIVSPPLRNHTTEFTISKYSDYGD
LITTITATDRDSGVNGDLSCTITAGNEAGYFYMDSRTCEIRANVSLRDLKTDHVELMIMV
QDHGSEPLETRALLHLSLLENPENLADPLATGGLGKENVLDASTIIIISLGAICGLLIII
MVALALRCSRDKNDTRSYNCRVAESTYQQRPRKPSRQIHKGDITLVPTVNGALPVHHHSP
TTTGPIHHSHQSLNSIVTVTSNQIPESFVLELTHATPPVEQVSQLLSLLHQGQYQPRPSF
RGNKHSRNYRYTLPDLDKFSLKDSGRGDSDSDGELGRDSPIDRLLGDGFSELFHIDTHSR
VHSAMKLCTEECRVLGHSDQCWMPSFSAEEERRSFSTFGKDADEEEEMDDGGEKSLLSDI
NSVFHRIVPPSHTDPGDLTEGSTPCGVTNENRKCFLPGNSHFQNSANHVSNSKWLPAMEE
IPENYEEDEMESTLGFRKRTEDEFAAEINKLLLDVHQS
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgtggaattttactacaagaagagaaacaatgcacagcgcgtgccttgtgctgttcact
ctcttggtgtctggatttggtcttgtggtgggacggacgctaaggtaccgtgtgtatgag
gagcaggaggcgggaaccgttatcggctcattgaaggaggatgcccgtgatgtgttatct
cacctgcccaacactgtgcccttacgtttccggtctgtgcagcgtggcggtgcgagcgcc
ttagcggtacgtgagcgtgatggagagatcagtgtaagaggccgactggatcgtgaaaag
ttgtgtgaccggaacccaaactgctcagtggagttcgatgtgctgaccctgcccactgag
cacctgcaactcttccatgtgcaggtggagatactggatgtgaatgaccatgcgccacgt
tttccacgtgcagtcatccctctggagatctcagaaacagcctccgtagggacacgggtc
cctctggacagtgctgcggacccggatgtcggtgagaatgctctgagcacatacaccctg
agtgcatctgacacctttggaatcgatgtccttactggaacaaatggtgccaagtacgct
gagctagtggtgctgaaggaacttgatcgagagacacgttccagctacgagctacgactt
acagcatcagatggtggctcacctcccagaactggaaccacacttctgaagatcaaagtc
gccgattcgaacgacaacaatcctatctttgcagagccgtcatataccattgacctccca
gaggacgcggcaccaggtgtgttgctggtggatctgaatgccacagatgcagatgaaggc
acaaatggcaagatcgtctactccttcagcagccatgtctctccaaaagtagtagaaacg
ttccgtatcgacccagacacaggtcacctgagtctgctcaggaaggtggactttgagaca
gacgattcgtatgacgtagacgtccaggcgcaagactcagggccaaactcaatgccagca
cactgcaagatcacaatcaaggtaaaggacgtcaatgacaacaatccagaagtcagtgtg
agcttgatgggaaatgatgaggaagcagcgctggtctcggagttagcgcccatagacacg
tttgtagcacttgtgcgagtggatgatgcagactcgggtttaaatggcgaagttgtgtgc
cggcttgctcgcgaaggacacttccggcttcagaagacacatgagaagaactatgtaatt
ctcacgaatgccacactagacagagagactagctcggagtacagtcttacgataattgct
gaggacagggggactccgagcctgtccactgtgagacacttcacagtgcgtgtacaggat
gagaacgataacgcaccccactttgacaagaaccgctatgacatctttaaagatgagaac
aactctcctggtgcttacctcgccacagtgcatgctaccgacccggacctagccactaat
ggccatgtaagctactctgttttagagggcatggtgcacggaagctccatttctacttat
gtcaccgtagatccatcaagcggtgccatttatgccttacgcacttttgactatgaggaa
attagccatattagcttcatgattcaagcacgtgactatggcaatccatcgctaagcagt
aatgtgactgttgtcttaaatgttctagatgtgaatgacaatcggccagttatagtatcg
cctccacttcggaatcacaccactgagttcacaatttccaagtattcagactacggtgat
ctcataaccacaatcacggcaacagatcgtgactcaggtgttaatggcgacctctcgtgc
accatcactgctggaaacgaggctgggtacttctacatggacagccgtacatgtgaaatc
cgtgctaacgtgagcttgcgtgacctaaagactgatcacgtggagcttatgatcatggtc
caggatcacggcagtgaaccactagagaccagggctctgctccacctgtccctgctggag
aatccagagaaccttgctgacccacttgccacagggggcttgggtaaagaaaatgttctc
gatgcctccacaattatcatcatctcactgggtgccatctgtggtctgctgattatcatc
atggtggcgctagctttgcgctgttcacgtgacaaaaatgacacacgttcatacaactgc
cgcgtcgcagaatcgacgtatcagcagcggcccagaaaaccttcacgccaaattcacaaa
ggtgacatcacactcgtaccaactgttaacggcgcacttcctgttcatcatcactcaccc
accaccacagggccgatccatcacagccaccaatcactgaacagcatcgtcactgtgaca
tccaatcagatcccagaaagctttgtcctggagctgacgcatgccacgccccctgtggag
caagtttcacagctgctctccctactccatcagggtcagtatcagcctcggcccagcttc
agaggaaacaaacactctcgcaactacagatacacactcccagacttggataagttcagt
ctgaaggacagtgggcggggcgacagcgacagtgatggtgagctaggtcgtgattcgcca
atcgaccggttgctaggtgacggattcagcgagctcttccacatcgacacacacagcaga
gtccactcagcgatgaagctgtgtacggaggagtgtcgggttctcggtcactcagatcag
tgctggatgccgtcattttctgctgaagaagagcgccgcagtttctccacctttgggaaa
gatgctgatgaggaagaggagatggatgacggaggggaaaagtctctgctttctgacatc
aattccgtcttccatcgaattgtccctccttctcacaccgatcctggcgacctcaccgaa
ggttctaccccctgcggtgtcaccaatgaaaacaggaagtgcttcctgccaggaaactca
cactttcagaattcggctaatcacgtatcaaattcaaaatggctgccagcgatggaggag
atcccagaaaactatgaggaggacgagatggagagcacgctaggattccgtaaacgaacc
gaggacgaatttgccgctgaaattaacaaactgttgctggatgtccaccagagctaa
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