Tachysurus vachellii: 132842760
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Entry
132842760 CDS
T09596
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03013
Nucleocytoplasmic transport
tvc03015
mRNA surveillance pathway
tvc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132842760 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
132842760 (ddx39b)
03015 mRNA surveillance pathway
132842760 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132842760 (ddx39b)
03041 Spliceosome [BR:
tvc03041
]
132842760 (ddx39b)
Enzymes [BR:
tvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132842760 (ddx39b)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132842760 (ddx39b)
Spliceosome [BR:
tvc03041
]
Complex C
Other components
EJC/TREX
132842760 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132842760 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132842760
NCBI-ProteinID:
XP_060721588
LinkDB
All DBs
Position
3:7529965..7540538
Genome browser
AA seq
446 aa
AA seq
DB search
MTTVTTVNSRMTENDVDNELLDYEEDEVDATGGIGDGVLAGDGSTVALRKEGLKGSYVSI
HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA
TLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPAIKVAVFFGGLPIKKDEETLK
RESPHIVVGTPGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK
QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL
DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMPQEERLARYQQFKDFQRRILV
ATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDESDARTLND
VQDRFEVNITELPEEIDISSYIEQTR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggtaacgacagtaaacagcagaatgacggagaacgatgtggacaacgagctg
ttagactatgaggaggatgaggtggatgcgacaggaggtatcggggacggagtgctcgct
ggagacggcagtactgtggccttgagaaaagaaggactcaaaggatcctatgtttccatc
cactcctcgggtttcagggacttcctgttaaagccagagctcctcagggccatcgtggac
tgcggcttcgagcatccgtctgaggttcagcatgagtgcattccacaagccatcttgggc
atggatgtgttgtgccaggccaagtcgggtatggggaagacggccgtctttgtcttggcg
acgctccagcagctggagccagtgactggccaggtgtcagtgctggtgatgtgtcatacc
cgagagctggctttccagatcagcaaagagtacgagcgtttctccaagtacatgccagct
ataaaggtggcagtgttctttggcggtttgcctataaagaaggatgaggagacactaaag
agagagagtcctcacatagtggttggaacgcctggccgtatcttggccctgtcacgcaac
aagagtctcaacctgcgtcacatcaaacacttcatcctggacgagtgtgacaagatgctg
gaacagcttgacatgagacgtgacgtccaggagattttccgcatgaccccacacgagaag
caggtcatgatgttcagcgccaccttgagcaaagaaatccgtcccgtctgccgaaagttc
atgcaagatcccatggaaatatttgtggatgacgagaccaagctgaccctgcatggcctg
cagcagtactacgtcaagctgaaggacaacgagaagaacaggaaactgtttgatctgctg
gacgtgctggagttcaatcaggtggtgatctttgtgaagtcagtgcagcgctgcatcgct
ctcgctcagctgctggtggagcagaacttcccagccatcgccatccacagagcaatgcct
caggaggagaggctcgctcgatatcagcagtttaaagactttcagagacgcatcctcgtg
gctactaacctgttcggcagaggaatggacatcgaaagagtcaacatcgcctttaactac
gacatgcctgaggattcggacacgtacctgcacagggtggcaagagcgggcaggtttggc
acaaaaggtctagccatcacgtttgtgtctgacgaaagcgatgcccggacgctgaatgac
gttcaggacaggttcgaggtgaacatcactgagcttccagaggagatcgacatctcgtct
tacatcgagcagacgcggtaa
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