Tachysurus vachellii: 132842890
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Entry
132842890 CDS
T09596
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tvc
Tachysurus vachellii
Pathway
tvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132842890 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132842890 (cnot3b)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132842890 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132842890 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
132842890
NCBI-ProteinID:
XP_060721832
LinkDB
All DBs
Position
3:13673986..13698293
Genome browser
AA seq
928 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVDNRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTSTIDMLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKLIERHRYHI
CMLETILRMLDNDSVQVDSIRKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEEISQPLVA
TSPPAHAEDEIFQHSSSTPTSTTSSSPIPPSPATCTTNSEDDKKRGRSTDSEFSQSPVKN
GNPSSLSSTSSSSTSSLGSSSTSVVSVATIASSSSSSSGGGGSSLLSNIGGHVQNSCSYS
SAIQQQMQHGQQQHQSKNAFNFQPSTSASAAPSSILLPNPTSTTSPSSINTPSNQAQSPL
TPSPASSLCHALSLGLAKSGAPTTSGVSQIPSLGLSGMLASRTNLPAPLQASTPAPYAQA
AASGTSNATVNTNVTSSSGVPAAGTNGNSVSTGLLGSSTGLLGSAPGTTGMSSAVLGLGT
TQTTVQPSSLVTPSPVGVGLVQTSSVGVIGSNGGNSTSGSAAAVGSSGLARPPSGQKQNG
GTKEAFIPPALSPAYSAVVADSVSDSALGSASQLQNNQASTLNSTTNLPKDSVSSLLGPI
TLATSSPSPSYSESKPSGGSLLNGPHSYTQAADAIKPQEPLSSLKSMAERAAQGSGLEGE
LSALHLPGVNKVGEWNTRGCNGSDIFPSSTAPSGTPTAPQSSLTEVNIPPSLGVCPLGSV
PISKEQQYQHIMQEAAWTHMPHPSDSERIRQYLMRNPCPTLPYHHQVPPPHSDSVEFYQR
LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYI
YFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaaactacaaggcgaaattgatcgatgtctaaagaaagtggccgaa
ggagtagaacagtttgaagacatctggcagaagcttcacaatgcagccaacgctaaccaa
aaagagaaatatgaggctgacctcaagaaagagataaaaaaattacagcgcctccgagac
cagattaagacgtgggtggcctcaaacgagatcaaagacaaaaggcagctagtggacaac
cgcaaactaatagagacacaaatggagcgctttaagattgtggagcgagaaacaaaaacg
aaagcgtactccaaagagggactcggtcttgctcagaaagttgatcctgcacaaaaagag
aaagaggaggttggacagtggctcacgtcgacgatagacatgttaaacatgcaagtggat
cagtttgaaagtgaggtggagtcactctcagttcagacacggaagaagaaaggagacaaa
gagaaacaggatcggatagaagagctgaaaaagttgattgagaggcaccgctaccacatc
tgcatgctggagaccattttgcgaatgctagataacgactcggtacaggtggattccatc
cgcaagatcaaagatgacgtggagtactacatcgattcttctcaggatcctgactttgag
gagaacgaattcctctacgacgacctggacctggaggaaatatcccagcctttggtcgct
acttctcctccagcgcacgcagaggatgaaatcttccagcactccagttccacaccaact
tccaccacttcgtcttccccaatacctccatccccggctacttgcactacaaattctgag
gatgataagaagcgaggtcgttccacagatagtgaattcagtcagtctccggtaaagaat
ggcaatccatcatctctttcctcaacctcatcatcctctacatcctctttgggatcctcc
tctacctcggtggtgtctgtagccaccatagcaagcagcagcagcagcagctcaggaggt
ggaggcagcagcctcctgagcaacatcggaggccatgtacaaaactcatgcagctacagc
tctgccatccagcagcaaatgcagcatggccaacagcagcatcaatccaaaaatgccttt
aactttcaacccagcacctctgcctctgcagctccctccagtatcctcttacccaacccc
acatcaaccacgtctccttccagtatcaatacacccagcaaccaggcccagtctccgctc
actccaagtccagcttccagcttatgccatgctctcagcctgggcctagccaaaagtggt
gcgccgaccaccagtggtgttagccaaattcctagccttggtctttcagggatgctggca
tccaggaccaatctgccagcgccccttcaagcttccaccccagcaccatatgcccaggcc
gctgcatctggcacttccaacgccacagttaacaccaatgtcacaagctccagtggtgtt
ccagcggctggcacaaatggaaacagtgtttcaacaggtctcctggggtcatcaacaggt
ctcctggggtcagcaccaggcactacaggcatgagcagtgcagttttaggtctcgggacc
acacagactacagtgcagccctcgtctttggtgacgcccagccctgttggagtgggactg
gttcagacgagcagtgtgggcgtcattgggagtaatgggggaaactctacatcaggaagt
gcagcagctgtggggagctcagggcttgcacggccacctagtggtcagaaacagaatggc
ggcacgaaagaggctttcattccacccgctctctctccagcctatagtgccgtagtagca
gatagcgtgtctgattctgcccttggtagtgccagccagttacaaaacaaccaagcctca
accttaaattccacaaccaatctgcctaaggacagcgtgtccagccttctggggcctatc
actcttgctaccagctcaccgtcgccgtcgtatagtgagagtaaaccaagtgggggcagc
ctgctgaatggacctcactcttacacacaagcggctgatgccatcaagcctcaggaaccg
ctcagttctctgaaatcgatggcagagagagcagctcagggctcaggtttagagggagaa
ctctctgcactccatcttcctggagtaaacaaagttggagagtggaatacacgggggtgc
aatggttcagatatcttccctagttccactgccccatcaggtacccctacagccccccag
tcttctcttacagaggttaacattcctccgtcgctgggcgtctgtcctctaggttctgtt
cccatctccaaagagcagcaataccagcacattatgcaagaggcagcatggacacacatg
ccccacccgtcagactcggagaggatcaggcagtacctgatgaggaatccctgtcctacg
ttgccttatcatcaccaggtgccaccaccacactcggactctgtggagttctaccagagg
ctgtccacagaaacgctgttcttcattttctactaccttgagggcacaaaggctcagtat
ttggcagccaaagccttgaaaaagcagtcctggaggttccacacaaagtacatgatgtgg
ttccagaggcacgaggagccgaagaccatcactgacgagtttgagcaggggacatacatt
tactttgactacgagaagtggggccagaggaaaaaggaaggcttcacttttgagtacagg
tatctggaggaccgggacctccagtga
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