Tachysurus vachellii: 132843082
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Entry
132843082 CDS
T09596
Symbol
afdna
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
tvc
Tachysurus vachellii
Pathway
tvc04517
IgSF CAM signaling
tvc04520
Adherens junction
tvc04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
132843082 (afdna)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
132843082 (afdna)
04530 Tight junction
132843082 (afdna)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
PDZ_2
RA_3
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
132843082
NCBI-ProteinID:
XP_060722139
LinkDB
All DBs
Position
3:complement(19042193..19142628)
Genome browser
AA seq
1912 aa
AA seq
DB search
MSGNREEERRKLADIINHWNANRLDLFEISQPTEELEFHGVMRFYFQDRVAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERKLDLDEKPLVVQLNWNKD
DREGRFVLKNENDIIPKKIQSNGPEKEKEGVIQNFKRTLSKKEKKKEKKRDKEASARIPD
GDEHSLSREDGENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFRSGDG
RPDSGGTLRIYADSLKPNIPYKTILLSTTDTADFAVAEALEKYGLEKENPREYCIAWVVH
FDDKPVKETVLEDSECPLQVFRDLTNDKDGLVFQLKKRPPDFMPKKGLKPGDRMVQLHGA
LPPEKLPYLVELSPGRGNHYAYYAYRQQEDGSDSRDKPKLYRLQHSVTEVGSDRNEDGNI
QLFGPGILPHHCDLRHTDGLVTITPITLDAETFVDGQRITDTTVLRSGMTLQFGAAHVFK
FVDPSYDHGLAKRDTGGMVKGRNKSGSVPEATFDLHGDLHSSALLTTSKSSGKLDMDRPG
NIGERGMVKPMMRTEPSFAKHDGRPQDSTELTLPASIEFRDNSEDAFLSAIINYTNSSTV
HFKLSPTYVLYMTCRYVLSSHYRPDVSASERTHKVIAIVNKMVSMMEGVIQEIAEGDQKQ
KNIAGALAFWMANASELLNFIKQDKDLSRITLDAQDVLAHLVQMAFKYLVHCLQSDLNNY
MPAFLDDPEEQNPQRPKIEDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNK
LVTESDSGLCSHYWGAILRQQLSHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSVQ
DVQNINNTCFKLNSLQLNALMSNYHCAPDEPYIPPELIDHVVAVAENTADELARSDGREV
QLEEDPDLQLPFLLPEDGYSCDVVRNIPNGFQEFLDPLCQRGFCRLTPHPRSPGTWTVYF
EGADCDSHFSADNTDLPMRKDPEIVTVTLKKHNGMGLSIVAAKGAGQEKLGIYVKSVVKG
GAADMDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATLL
NQPSPMMQRASDRGRMDKGKTRPKSEGFELYNNSVQNGSPESPQGNWDSYPEQKRDERLL
KNRADHRSSPNVANQAQSPGGKPVYPGGPGKITSVSTGNLCPDEEPSPPRPEAYPIPTQT
YPRDYFTFPASKSQDRMGPGPGQVWQGGEPEPHPPMDEHLHNNMVMQRGARSQEELCDAP
TRYPGDRVRQDDLLHLQQQQHEAEYQRGGDPWNHHVSSSVESSTSSQEHLNNFSSSSSKA
QSNHKSGAGRWKTPGAPHPGPVGVSQPSRTDLPPPPPPPPPSHYDYDPQADLPLPPPPSI
SQQQAAADRKKREEQQRWYEKEKARLEEERERKRREQERKLGQIRNPAMPPHVLHNNSQH
QQIPPPQQIPQPYLPPAQPPQPQLPRPEKLPTLPRAPPPPAPQDTVIRDLQPQQQPRTIE
RRDLQYITISKEELSSADSLSPDPWKRDAREKLEKQQQLHIVDLLDKEIQELQSKPERTA
EESDRLRKLMLEWQFQKRLQESKQSEEDEEEEDDEDVDTVLIMQRLEAEKRVRLQDEERR
RKQQLEEIRKREAEERAIQEEERRRREEERARREAEEKRRQEEEYYTRLEAERRRQHEEA
ERKLLTPDEPGLYRPPLPWDYQPPSPATNTTTAVNPPPTPPQRNTSYLKTQVISPDTLYT
AKFVSYNDEEEEEEEEEEEDAGLAGQVKLSATRKSYGDLLPAQKPLPPPTARKPRPLSDG
IFLSSSFQLPAEANANSTASKAGQAPPPPAKPKGFNTYTGNTTGVLGSGEVYKDPREKWT
KGGADQENSIAGAPENLTFKERQRLFSQGKEVSNKVKASRKLMELENELNTK
NT seq
5739 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggaaccgagaggaggagcggcgcaaactggccgacatcattaaccactggaac
gcgaaccggctcgacctgttcgagatcagtcaacctaccgaggagttggagttccacggc
gtgatgcgcttttacttccaggaccgagtggccgggaacttcgccaccaagtgcatccgc
gtgtccagtacagccaccacgcaggacgtgatcgagacgctggccgagaaatttcggccc
gacatgagaatgctctcctcgcccaaatactcgctgtatgaggtccacgtcagcggggaa
gaacggaagctggacttggacgagaagcccctggtggtgcagctgaactggaacaaagac
gaccgagagggacgctttgtcctcaagaacgagaacgacatcatcccaaagaaaatccaa
agcaacgggcctgagaaagagaaagaaggcgtgatccagaacttcaaaaggacgctgtcc
aagaaagagaaaaagaaagagaagaagagagacaaagaggcttctgctcggattcctgat
ggagacgagcactctctgagccgagaggacggagagaactcgagactggcggcagaagtg
tacaaggacatgcctgagaccagcttcactcgcaccatctccaacccagaggtggtgatg
aagagaaggagacaacagaagctggagaagaggatgcaggagttccgcagtggagatgga
agacctgactcaggaggaacactgaggatctacgcagacagcctaaagcccaacatcccc
tataagaccatcctgctctccaccacagacacggcagacttcgctgtggccgaggctctg
gagaagtacggcctggagaaggagaaccccagagagtactgcattgcttgggtggtccac
tttgatgataaacctgtaaaagagaccgtgctggaggactcggagtgtcctttacaggtc
ttcagagacttgaccaacgataaagacggattagtgttccagctgaagaaacgtcctcct
gacttcatgcccaagaaaggactcaagccgggggacagaatggtgcaacttcatggagcg
ctgcctcctgagaaactgccttacctggtggagctgagtccaggtcgagggaatcactat
gcctactacgcttatcggcaacaagaagatggttcagactcgagggataagcctaaactg
taccggttacagcacagcgtgactgaggtcggctcagacaggaatgaagacggcaacatc
cagctgttcggcccggggatcctgcctcaccactgtgacctgaggcacaccgatggtctg
gtcacgatcacacccatcacgctggatgccgagacctttgtggacggacagaggatcaca
gacaccacggtgctgcgcagtggaatgacgctgcagttcggtgccgctcacgtcttcaag
ttcgtggaccccagttatgaccacggcctggccaagagagacacagggggcatggtgaag
ggcagaaacaagtctgggagtgtcccggaggcgacctttgacctgcacggggaccttcac
agcagcgctttactcacaaccagcaagagctcagggaagctagacatggatcgtccaggt
aacattggggagaggggcatggtgaagcccatgatgcgcacagaacccagctttgcaaag
catgatgggagacctcaagacagcactgagctcacgctgccagctagcatcgagttcagg
gacaactctgaagatgctttcctttcggccataatcaactacaccaacagctcgactgtg
cactttaagctctctcctacttacgtcctgtacatgacctgccgctacgtgctgtccagc
cactacagacccgacgtcagtgcctccgagcggacgcacaaagtcatcgccatcgtcaac
aagatggtgagcatgatggaaggagtgatccaggagattgctgaaggtgaccagaagcag
aaaaacatcgctggcgctctggccttctggatggccaacgcctcggagctgctcaacttc
atcaagcaggacaaagacctgagccgcatcacgctggacgcccaggacgtcctcgcgcac
ctcgtacagatggccttcaagtatctggttcactgcctgcagtcagatctgaataactac
atgccggcgttcctcgacgatcctgaagaacaaaacccacagagacccaagatcgaggac
gtgctgcacacgctgacgggcgccatgtctctgcttcgacgttgccgtgtgaacgcggcc
ctcactatccagctgttctcgcagctcttccacttcatcaacatgtggctgttcaacaag
ctggtgaccgaatcagactcgggtctgtgctcgcactactggggcgccatcttgcggcag
cagctcagccacatcgaggcctgggctgagaaacagggtctggagctcgctgccgactgc
cacctcagccgcattgtgcaggcaacgactcttctcaccatggacaagtactccgtgcag
gacgtccagaacatcaacaacacgtgcttcaagctcaactctctgcagctcaacgcgctc
atgagtaactaccactgtgccccggacgagccatacatcccccctgagctgatcgatcat
gtggtggccgtggcggagaacacggcggacgagctggcacgcagcgacggtcgagaggtt
cagctggaagaggatcccgacctacagcttcccttcctgctgccggaggacggctactcc
tgtgacgtggtccgcaacattcccaacggcttccaggagtttctggatccactgtgtcag
agaggtttctgccgcctgactcctcatcctcgctctcccggaacctggactgtctacttt
gaaggagccgactgcgacagccacttctccgcagataacactgacctgccaatgaggaag
gatcctgaaatcgtgacggtgacgttgaagaagcacaatggcatgggcctcagcatcgtc
gctgccaagggtgctggacaggagaaacttgggatttacgtcaagtctgttgtcaaagga
ggagccgcagacatggacggtcgtctggctgccggagatcagttgctcagcgtggatggg
agaagtctagtcggcctctctcaggagagggcggcggagctgatgactcggaccggctcg
gtggtgactctggaggtggccaagcagggcgccatttaccacggcctggccacactgctc
aaccagccgtctcccatgatgcagcgggcctcagaccggggccgtatggacaaaggcaaa
accagaccgaagagcgaaggcttcgagctctacaacaactcggtgcagaacggttctccg
gagagcccacaggggaactgggactcgtaccctgagcagaaaagggacgagagactgctg
aagaatcgagcagatcaccgctccagccccaacgtggccaatcaagcccagagtccagga
ggaaagcccgtgtaccccggaggaccggggaaaatcacctctgtttccacgggcaacctg
tgtcctgatgaggagccttccccgccccgtccggaggcttatcccatccccacacagacg
taccccagggactacttcaccttccctgcctccaaatctcaggacaggatggggcctgga
cccgggcaggtctggcagggtggcgagcctgagcctcatcctccaatggacgagcatctc
cataacaacatggttatgcagcggggcgcacgctctcaggaagagctgtgtgatgcgccc
accagataccccggcgaccgagtacgtcaggacgacctgctccacctacaacagcagcag
catgaggcagagtaccagcgtggtggagatccctggaaccatcatgtctcctcttctgtg
gagtccagcacctccagccaggagcacctgaacaacttctcctcctcttccagcaaagca
cagagcaaccacaagagcggcgcaggtcgctggaagacccctggagctccccatcctggc
ccggtgggtgtatctcagccttctcgtacagacctgcctcctcctcctcctccgcctccc
ccatcacactacgactatgatccgcaggctgacctgcccctaccccctcctccctccatc
agccagcagcaggcggcggccgaccgcaagaaacgggaagagcagcagcgctggtatgag
aaggagaaggcacggttggaggaggagcgtgagaggaaaaggagggagcaagagaggaag
ctggggcagattcgcaaccccgctatgcctccgcacgtcctgcacaacaacagccagcac
cagcagataccgccacctcaacagattccccagccttacttgcccccggctcagcctccg
caaccgcagcttccccgccctgagaaactacccactcttcctcgagctcctcctcctccc
gctcctcaggacacggtgatccgggatctgcagccccagcagcagccacgcaccatcgag
aggcgcgacctgcagtacatcaccatcagcaaagaggagctgtcgtcggctgacagcctg
tccccggacccatggaagagggatgcccgggaaaagctggaaaagcagcaacagcttcac
atcgtcgacctgctcgacaaggagatccaagagctgcaatccaagccggagcgcacggcc
gaggagagcgaccgcctgcgcaagctcatgctggaatggcagttccagaagaggctgcag
gaatccaaacagagcgaggaggatgaggaggaggaggacgacgaagacgttgacacggtg
ctgatcatgcagaggctggaagcagaaaagagagtacggctgcaggacgaggaacggcga
cggaagcagcagctggaggagatccgtaagcgcgaggcagaagaacgagccatacaggaa
gaggagagacggaggagagaagaggagcgagccagacgagaagccgaggagaagaggaga
caggaggaggagtactacacccgcctggaggcggagaggcgccggcagcacgaggaggcc
gagcgcaagctgctgacgccagacgagcctggtctgtacagacctcctctcccctgggac
taccagcccccctctcctgccactaacaccaccaccgccgtcaaccctcctccgaccccg
cctcagagaaacacctcgtacctcaaaacccaggtcatctcccccgacaccttatacact
gccaagtttgtctcatacaatgacgaggaagaggaggaggaggaggaggaggaggaggat
gcaggcttagcaggtcaggttaagctctctgctacgcggaagtcctatggcgaccttctg
cccgcccaaaagcctctgccgccgcccactgcgcgcaagccccgcccactctcggacggc
atctttctgtccagctcattccagctgcccgcagaggccaatgccaacagtactgcgtcc
aaggcagggcaagcccctccccctcccgccaaacccaaagggtttaatacatacactgga
aacacaacgggagttttaggatcaggagaagtttacaaggaccctcgagagaaatggacg
aaaggcggagcggatcaggagaactcgatagccggagcgccggagaatctcacgtttaag
gagcgtcagagacttttctcacaggggaaagaagtttccaacaaagtcaaggcctcacgc
aaactcatggagctggaaaatgaactgaacaccaaatag
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