Tachysurus vachellii: 132843139
Help
Entry
132843139 CDS
T09596
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
tvc
Tachysurus vachellii
Pathway
tvc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132843139 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tvc03000
]
132843139 (arid1b)
03021 Transcription machinery [BR:
tvc03021
]
132843139 (arid1b)
03036 Chromosome and associated proteins [BR:
tvc03036
]
132843139 (arid1b)
Transcription factors [BR:
tvc03000
]
Eukaryotic type
Helix-turn-helix
ARID
132843139 (arid1b)
Transcription machinery [BR:
tvc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132843139 (arid1b)
Chromosome and associated proteins [BR:
tvc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
132843139 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
132843139
NCBI-ProteinID:
XP_060722243
LinkDB
All DBs
Position
3:complement(21402246..21464736)
Genome browser
AA seq
2094 aa
AA seq
DB search
MGSRYDSSKIGPTSNDNNNNINSSSSSSNNDGGSESSRSGNGSGFEFNHYYGDGRRGGPC
FDQHGGQQSLGAVTHSARNNMDQMQNSHEEYHNNPYNHYPNYRSGYGGAGYGMMSPSRQG
NAMGPGSNSATAAAAAAAAHGKAAMASPSAPAAATNVGGFQRFPPGQSKQQQHPSGATPT
LNQLLTSPSPMMRGYGSGYQDYNNNPSVQQQATMGLGKDMGSPYGSASHGWGAQQRNHPA
MSPGNNGQGNNRPQVVPMDAMAMKRSQLYGMTNSPYSQQPQQQQQQQQQQSGGAYSGQPY
GAPAPHRYPMGMQGRGQVSMGALQYHHQQQVPAQYGQQGMGGYCQQGQPPYFSPPHQQPA
APSQPHYMQPRAPPQQDAPQEAYGSRAQPAMTPGKPNHDEMGLNQQERPSSLPDLSGSID
DLPTGTEAALSSAVSASGSTSSQGEQSNTAQSPFSPHASPRLSGLRSGPSPSPVGSPVGS
SQSRSGPISPASVPGTQIAPQTPGNVSDVASHSTLSQSPMSQERGFASNLQRSGPGPQFG
PQQPGPSMSPHPSPGGPLHHSVGSYQQGGPGYGPQGGQYGPSGNYPRLPSYGGAPGPSYS
GPGPGMSLGMNASSPMHGQGPGQPCGSMPAARGPAQPGGGRPYPAGSSGAAPTSPSMPQS
AGPGMGPPPPTSVRKPHESGAAPSPQNPHAPGPARPPYTRSPVYPGVRPNPFTPPHFPQP
HTSLYTSDPGQPQPEHYGSGGYQGGPSMGGMGHGGPYNPPQSANSSRMNLQGPPYSTMPS
GPMPMGPGDGMPPTEPKQRAEKEESSMAGNEPPKSKDSSSSHCVSQPPTPSPLSPSPASL
SSNHGDDSDSISSPAWPKTPSSPKPNSATMTNEKITRLYEMGNEPERRAWVDRYLAFMDE
RGTPVPNLPAVGKKPLDLCRLYLCARDIGGLAMVNKNKKWRELSTLLNVGTSSSSASSLK
KQYIQYLFAYECKVERGEEPPPEAFITESKKQQQAKIQPPSPANSGSLQGPQTPQSTGSS
SMTEMPGDLKPPTPASTPHSHMPLQQSGRNSGVSVQDPFSDSSDPAFQKRANVPPGMMYQ
QGGGGIDTRMQYDANKEPYGGQRKGGNDPFMPGPVPSSGMQDMYPRGPPQGMGMGMRPQY
PYNQGFDRRPDHAMGSDGGMVPPGNQNNMMPSNSDPNIYPGNRYPAPQRHGHDGYGQQYP
QGMPYGAHGMYPQPQGYKRPGEGMYGPPAKRHEGDSYGMQFSGQQPDMYGQYGGYPERRP
MQGQFPYPYNRERMPHGGQGPPQHGMMGGGPSPTPSSGPQGNMWHPRTDMVYPYPSRQGH
GPPYPSMSRADDPEGRANQDGQWPSHPGQRQSPYPPQSSSASPMPPMTNRQPPSSYQSPP
AMPNHIARAPSPAPFPRPMGGSMSPNKSHLMPSMKMPKPGVPASMPGSQSGGVPGQGLPP
IHREISFPLDSIEATQPQLKPRRRLTSKDIGTPEAWRVMMSLKSGLLAESTWALDTINIL
LYDDNTVSSFTLSQLPGFLELIAEYFRRCLIEIFGILEEYEVGTAGQKTLLGPLPEPAEK
EELELQEHDIHSNIEQVDKKPESVSQKCVPSSTSEAEALEKKPEEPIEQKMERQNEVGKE
NCPTTEPRPKQASKYDRLPVKVEEREAIADLVEDRSEELGLASEFTSGLLHWKAGGGDST
AHIQTHFDRKFEETGAKSLIIKDFEEVKEQDTVDRCQEESSHKQDQDVIDKCLTVTADDT
GSLPESEAQESTLQSQENHRSIKLREDEPLCWDEAPLSTAEDWQDELAKRCICISNIVRG
LSFVPGNDADMARHPGLVLILGKLVLLHHEHPKRKRTPSTYQREEERSLACSKDEWWWDC
LGALHENTLVTLANISGQLDLSIYPESICLPILDGLLHWMVCPSAEAQDPFSTASGFSSL
TPQRLVLECLCKLSIQDCNVDLLLATPPFSRQERLFATLVRHVGERKSQVCREMAVAVLA
NLAQGDPTAARAIALQKGSIGTLIGFLEDSLAMAQYQQSPHSLLHAGHPTHPEPPSINMM
CRAAKALMAIAQVEENQPEFVLYESRLLDITLSSVLNSSVAAILCEVLFKLGRS
NT seq
6285 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcaggtacgactcgtctaaaatcggaccgacgagtaacgacaacaacaacaac
atcaacagcagtagcagcagcagcaacaacgacggcggcagtgagtcgtctcgaagtggg
aacggctcaggttttgagtttaatcattattatggggatggaagaagaggagggccttgc
tttgatcaacatggcggacaacaaagccttggtgctgtaacgcattcggcacggaacaac
atggatcaaatgcaaaactcgcacgaagagtatcacaataatccgtacaaccactatccg
aactaccgttccggttacggtggggctggatatgggatgatgagcccatcgcgacaagga
aacgccatgggcccaggcagtaactcggctacagccgctgctgctgccgccgctgctcat
ggtaaagctgctatggcttctccttctgccccggctgctgctacaaacgtcggcgggttc
cagaggtttccaccaggccagagtaaacaacagcagcacccatcgggcgccacgccgact
ttaaatcagcttctgacctctccaagtccgatgatgcgcggttatggcagcggctatcaa
gattacaataataatccctcggttcagcagcaggcgaccatggggctcggcaaagacatg
ggctccccgtacggctccgcaagccacggctggggggcacaacaaagaaaccacccggcc
atgagccctggaaataacggccaaggaaacaacagaccccaggtggtacccatggacgcc
atggccatgaagcggtctcagctttacggcatgacaaatagcccttattctcagcagcca
caacagcagcagcagcagcaacaacagcagtcaggcggagcctactccggccagccatac
ggagctcccgctccacaccgatatccaatgggaatgcaggggcgtggccaagtcagtatg
ggagccctgcagtaccatcatcaacagcaggtcccggcgcagtatggacaacagggcatg
gggggttactgccagcagggtcagcctccatacttcagtcctcctcatcagcagcctgca
gctccctctcagcctcactacatgcaaccacgagctccaccgcagcaggatgctcctcag
gaggcgtacggcagcagagcccagccagctatgactcccgggaagcccaaccacgatgag
atgggcctgaaccagcaagaacggccatccagccttccggacctgtcaggctccatagac
gacctcccgaccgggacagaggcagcactgagctcagctgtcagcgcctcgggttccacc
agcagccaaggtgagcagagcaacacggcgcagtccccgttctcccctcacgcgtcgccc
cgtctctctggcctacgcagcggaccctcgccttctccggtcggctcgcccgtgggctcc
agccagtcacgatccggacccatatcacctgccagcgtaccaggtacacagatagcccca
caaacaccaggaaatgtatcagatgtggcttctcattcaaccctcagtcaatcgcccatg
tctcaagagaggggatttgcctcaaatctgcagcgcagtggccctggccctcagtttggc
ccccagcagcctggaccctccatgtcccctcacccatccccaggaggccccttgcaccat
agcgtgggctcttaccagcagggcggtcctgggtacgggccccagggtgggcagtacggc
ccttcaggtaactatcctcgtctgcccagctacggcggcgctccaggccccagctacagt
ggccccgggcctgggatgagcctaggtatgaacgccagcagccccatgcacggtcagggc
cccggacagccctgtggctcgatgcctgctgctaggggtcccgctcagccgggcggagga
cgtccatacccagcaggctccagtggtgcagcgcccacgtctcccagcatgcctcagtct
gcagggcccggcatgggcccccctccgccaacaagcgtccggaagccacacgaaagcggc
gctgctccctcaccacagaacccccacgcacccggaccggctaggcctccatataccagg
tcccctgtgtatcctggggtacgtccaaacccttttaccccccctcatttccctcagccc
cataccagtctctacaccagcgacccaggccagcctcagcccgagcattatgggtccggt
gggtaccaaggtgggccctcaatgggtggaatgggtcacggaggcccctacaacccacca
cagagtgctaactcgagccggatgaacctccagggaccaccgtacagcaccatgccttcg
ggacccatgcccatggggcccggagacggcatgcctcccactgagccgaaacagagagca
gagaaggaggaaagcagcatggctggcaacgaaccaccaaaatcgaaggacagctccagc
tcccactgtgtgtctcagccccccaccccgtctcccctgtcccccagccctgctagtctg
tcctctaatcacggcgatgacagtgacagcattagcagcccagcctggccaaagacccca
agcagtcctaagccgaactctgccaccatgacgaacgagaagatcacacgcctgtatgag
atggggaacgagccagagaggagggcctgggtggaccgctacctggccttcatggatgag
aggggcacacctgtacccaacctacccgctgtaggcaagaagcccctggacctgtgccgt
ctgtacctgtgtgctcgggacattggaggcctggccatggtgaataagaataagaagtgg
cgtgagctctccacacttctgaacgtgggaacatccagcagctcagctagctccctgaag
aagcagtatatccagtacctgtttgcttatgagtgtaaggtggagcgtggtgaagaacct
ccaccagaagccttcatcactgaaagcaagaagcagcagcaagccaagatccaaccgcca
tcaccggcaaactccggttctctccagggccctcagactcctcagtctacaggcagcagc
tccatgacagagatgcctggggatttaaagcccccgactccggcctctacgccacacagc
catatgccccttcagcaaagtggcagaaacagtggcgtcagtgtgcaggatccattttct
gatagcagcgatccagctttccaaaagcgagccaatgtcccacctggtatgatgtaccag
cagggaggagggggaatagatacacgaatgcagtatgatgccaacaaggagccctatgga
ggtcaaaggaaaggtggaaatgaccctttcatgccagggccagtgccaagcagcggtatg
caggacatgtacccacgaggacccccccaaggcatgggcatgggcatgagaccccagtac
ccttacaaccaaggatttgacagaaggcctgaccatgccatgggttcagatggtggaatg
gtgcctcctggaaatcagaacaacatgatgccttccaacagtgatccaaacatttaccca
ggaaacagataccctgcccctcagaggcatggccatgatggttatggacagcagtatcct
caaggcatgccatacggtgcacatggaatgtacccacagccacagggctataagagacct
ggggaagggatgtatggccctccagcaaagcgacatgagggtgattcctatggcatgcag
ttcagtgggcagcagccggatatgtacggtcagtacggtggctacccggagcgcagacct
atgcaggggcagttcccgtacccctataaccgtgaacgcatgccgcatgggggacaagga
ccacctcagcatggcatgatgggtgggggaccatccccaactcccagcagcgggccccaa
ggtaatatgtggcatcctaggactgatatggtctacccttaccctagcagacagggccac
gggcctccatacccctccatgagccgtgcagatgacccagagggaagagcaaatcaggat
ggtcagtggccgagtcacccgggccaacgtcagtctccttatcctccccagtcgtcatct
gctagccccatgccacccatgacaaaccgccaaccgccgtcctcttaccagtcccctcca
gccatgcccaaccacattgctcgtgctccaagtccagcaccatttcccagacctatggga
ggttccatgtcccccaataagtctcatttgatgccgtctatgaaaatgccaaaaccaggg
gttcctgcgtctatgccaggatcacagagtggaggtgtcccaggtcaaggcctcccaccc
atacacagagagatcagctttccactggattccattgaggctacacaacctcagttaaag
cctcgtcgaaggttaacgtccaaagacatcgggacaccagaggcctggcgcgtgatgatg
tctctgaagtctggtttgctagcagagagcacttgggctttggacaccataaacattcta
ctatatgatgataacacggtgtcgtcttttaccttgtcacaactgcctggtttcttggaa
cttatagctgaatatttcagaagatgcttgattgaaatctttggaatcctggaggaatac
gaagtgggtactgcgggtcagaagacattactcggccccctcccagagccagcagagaaa
gaggaactggagcttcaggagcatgacattcattcaaatattgagcaggtagacaaaaaa
cctgaatcagtgtctcaaaagtgtgtccccagcagcacatctgaagcagaagctttggag
aagaagccagaagagccaatcgagcaaaagatggagaggcaaaacgaagtgggtaaggaa
aattgtcctaccacagaacctaggcccaagcaagctagcaagtacgacagattgccagtg
aaggtggaggagagggaagcaatcgcagacctggtggaagaccgatcagaagagctgggc
ttggcttcagagttcaccagtggcctgctgcactggaaggctggaggaggagactcaact
gcccatatccagacccactttgatagaaaatttgaggagactggggctaaatcattaata
attaaggattttgaggaggttaaagaacaagacactgtggatcgctgtcaagaggaatcc
tctcataagcaagaccaagatgtcatagataagtgtctgacagtcactgcagatgataca
ggatctctacccgagagtgaggcccaagagtccactttacagagccaagagaaccaccgc
agtatcaagcttcgggaagatgagccactttgttgggacgaggcaccactttctacagcc
gaagactggcaggatgaactggctaagcgctgcatatgcatctccaacatagtccgtggg
ctctcctttgtgccaggtaatgatgctgacatggcacggcatccaggtctggtacttata
ctgggcaagctggtgcttttgcaccatgagcacccaaagaggaagaggacaccttcaacc
taccagcgtgaagaggagcgaagtcttgcttgtagcaaggatgagtggtggtgggactgt
cttggtgccttgcacgagaacaccttggtgaccttggccaacatttcagggcagcttgat
ctgtcaatctatcctgagagcatctgcttacccattctagatgggcttttgcactggatg
gtttgtccttcagctgaggcccaggaccctttcagcacggcgagcggcttctcttctttg
accccacagaggctggtgctggagtgcttgtgcaagttgagtatccaggactgtaatgtg
gacctgctgttagcaacaccgccattcagccgtcaggaacgcctctttgcaacattagtg
cgtcacgtgggcgaacgtaagagtcaggtgtgccgggaaatggccgtggctgtccttgcc
aacctggcacagggtgatccaacggcagcgagagccattgcacttcagaagggaagtatc
gggaccctgataggctttttagaggacagtcttgccatggcgcagtatcagcagagccca
catagcctgctacatgcaggacatccaacccacccagagccacccagcatcaacatgatg
tgccgggctgctaaagctttaatggcgatcgctcaggttgaggagaaccaacctgagttt
gtgttgtatgagagccgcctcctggacatcacgctgtcgtccgtgctgaactctagcgtg
gctgccattttatgcgaggtgctgtttaagctgggacgctcgtga
DBGET
integrated database retrieval system
