Tachysurus vachellii: 132843166
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Entry
132843166 CDS
T09596
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
tvc
Tachysurus vachellii
Pathway
tvc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132843166 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvc03019
]
132843166 (cpsf2)
Messenger RNA biogenesis [BR:
tvc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
132843166 (cpsf2)
U7-dependent histone pre-mRNA processing factors
132843166 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
132843166
NCBI-ProteinID:
XP_060722293
LinkDB
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Position
3:22338711..22346385
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDAMKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTENFALFTLDDVD
SAFDKILQLKYSQIVNLKGKGHGLSITPLPAGHMLGGTIWKIVKDGEEEIIYAVDFNHKR
EIHLNGCSLEAVSRPSLLITDSFNAAYVQPRRKQRDEQLLTNIMETLRNDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDSKNSIILTYRTT
PGTLARYLIDHPGEKMIDLEIKKRIKLEGKELEEYLEKEKIKKETAKKLEQAKEVDVDSS
DESDMEDDLEQPAVVKSKHHDLMMKGEGGRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRPEEFLVPELQATEEEKSKLESGLANGDEPMEQDLSDVPTKCISIKETLEIRARVTYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAESCKAFSGKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCKARETELAWIDGVLDMRVVKVDTGVLLEDGDTRDDTED
GEITMDVTPEVMAENSTVATQRAMKTLFGEDEKEISEESDVIPTLEPLPLTEAPGHQAVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGIEGCMCEDYFRIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcatcaagttgactgcagtgtctggggtgcaggaggagtctgctctctgc
tacctgttacaggtagacgagttccgcttcctgctggactgtggctgggacgagagcttc
tccatggacatcatagatgctatgaaaagatatgtccatcaggtggatgcagtgcttctg
tctcatccagatccacttcatctcggcgctttgccctatgctgttggcaaactgggtctc
aactgtgccatctatgccaccatccctgtgtataaaatgggtcagatgttcatgtacgat
ctttatcagtctcgtcacaacacagagaatttcgccttgttcacgctggatgacgttgac
tcagctttcgacaagatcctgcagttgaaatactcacagattgtgaatctgaaaggtaaa
ggacacggcttgtccatcactcctctccctgcgggacacatgcttggtgggaccatttgg
aaaatcgtaaaggatggagaagaggaaattatttatgctgtggatttcaaccacaagaga
gaaattcacctgaacggctgttccctcgaggcggttagtcgtccctcacttcttatcacg
gactccttcaatgccgcttacgttcagcctcgcaggaaacagcgtgatgagcagctccta
acgaacatcatggaaacgctgcgtaatgacggcaatgtgctgatcgctgtggataccgca
ggccgtgtgctggagcttgctcagctactggatcagatctggaggacgaaggatgcagga
ctgggcgtctactctctcgccttgctcaacaacgtcagctataatgtggtagaattctcc
aagtctcaggtggagtggatgagtgacaagctgatgcgatgcttcgaagacaagcgcaac
aacccgttccagttccgccacctgtctttgtgccacagtttagcagatttggcacgagtg
ccgagtcccaaagtggtgctgtgcagccagcctgatctggagtctgggttctcacgtgag
ctttttatccagtggtgccaggactccaaaaactccatcatactgacatatcgcaccacg
ccaggcacgctggcacgctaccttatagaccaccctggagagaagatgatagatttagag
attaaaaaaaggatcaagctggaaggtaaggagttggaggagtatctggagaaggagaaa
ataaagaaagaaactgctaaaaaactggaacaagcgaaagaggtggatgtggactcaagt
gatgagagtgatatggaagatgatttggagcagcctgcagtagtgaagagcaaacatcac
gatctgatgatgaaaggtgaaggagggcgcaaaggaagcttcttcaaacaggccaaaaaa
tcataccccatgttccctactcacgaggagaggattaaatgggatgagtacggagagatc
attagacctgaggagttcctggttcctgaactgcaggccacagaggaggagaagagtaag
ctggagtcaggcctggctaacggagatgagccaatggagcaggacctttcggatgtcccc
actaagtgcatatctattaaggagacactagagataagagctcgagttacttacatagac
tatgagggacgttcagatggagattccattaagaagattataaaccaaatgaagccccgg
cagctggttattgttcacggacctccggaggctagtcaggacctggccgagtcctgtaag
gccttcagcggtaaagatatcaaagtgtatacacccaaactgcaggagactgtggacgcc
accagcgaaacgcacatttaccaggtgaggctaaaggactctttagtcagctctctgcag
ttctgcaaggccagagaaacagaactggcttggatagatggcgtgctggacatgcgtgtg
gtgaaggtggacacgggtgtactgctggaggacggagacaccagggacgatacagaggac
ggcgagatcaccatggatgtgacccccgaagtcatggctgagaatagcactgtagcaacg
cagcgggccatgaagacactgttcggagaggacgagaaggagatctcggaggagagcgat
gtcattcctacactggagccactgccacttactgaggctccaggtcaccaggctgtgttc
attaacgagccaaggctttcggacttcaagcaggttctgctgcgtgaggggattcaggcc
gagtttgtgggcggagtacttgtctgtaataacatggtggctgtgcgcaggacggaagca
ggacgaatcgggatagagggctgcatgtgtgaagattacttcaggattcgggagctgctg
tatcagcagtatgccgtggtgtag
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